SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4650

Length: 2037 nt

Origin of reads: Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene4650
AGCAGGGTTGCAGATGTTCTTAAAGATCGCCTGGATGGTTCTGTGATACCCGTCGAATGGAAATTTTAGGTGCATTCACAACTAGCAGTGGTGCAACGGTGGAGTTGTTGTACTCTCAGATGTATTCTCCAACCACTCTTACCCAAGCTCGAGACTTTTGCACATTACGATATACGTCGGTACTCGAGGACAGAAACTTGGTGGTTTGTGAACGTTCACTGAACCTGGGTATGGTACCTCCAAATGAAGGTTTTGTCAGAGCAGAGATGCTTTCAAGTGGATATTTAATCCGTCCATGTGGAGGTGTTGGATCAATTGTTTACATTGTTGATCACATGGACCTGGAGGCAGGACGAGCTCCAGAGGTATTAAGGCCTATGTATGAATCTTCTGCTATTCTTGCACAAAAAATGACTATTGCTGCCTTACGTCATTTACGTTCCTTAGCACAAGAGGCTGCTGGTGAGGTTGTGACTGGAGGTACTCTACAACCAGCTGCACTGCGAGCGCTGAGCCTTCGGATTGCCCGGAGCTTCAATGATGCTATAAACAGTTTTCCTGAAGATGGCTGGTTTTCAGTTGCTAGCGACGGGATGGATGATATCAGTATTTCACTTAATTCATCATGGAGTCCTAGAACAGTTGGTCTCAAGTGCAGTTCGTCCAACAACTTGTGGTCTGATGGTGATGGGGGTGTTTTATGTGCCAAGGCTTCGATGCTTTTGCAGAATGTTCCTCCAGCAGTATTGATACGTTTCCTTCGAGAGCATCGGTCGGAGTGGGCAGATTGGGCAGACTGTGAACATGATATGAGCTGTTCAGCCACATTGCGAACTCGTGTATATGGTGCTGCAGCTTTAGCTGGAGCTGAACTTGGCAGACGAGAAGTACCTATGCCTCTAGCCCATTCTGAACATCAAGAGATAATGGAGTTAGTCAAGTTTGAAGGTTATGACTCTGCTCGAGATGGTGCTTTAGTGTCAAAGGAGATGTACTTACTCCAGCTTTGCAATGGCATCGACGAAACTGCTATTGGTGATTGTGCACAGCTAGTTTTTGCCCCTGTTGATGGTGCCCTGTCTGATGATATACCATTGTTGCCATCTGGCTTTCGTGTCATACCGCTAGATACTGGCTTTATGGATGGATATGGTCCGTCTTGCACCCTCGATTTAGCTTCCATGCTGGATGGTGGTTCAGATATGGATGCGGCAAAGACTGAAACTGGAATTTCGGCTAACAATATGCGCTCTATTGTCACCATTGCATTTCAGTTTGGTTATGAGACACATAACTGTGACAGTGTGTCAGTTGCTGCCCACAAGTACATGCGTACTGTTGTTGCTTCTGTTCAGCGTGTTGCAATGGCAATCGCTCCCAGAGTGGGCTCAACACTGGGTTTAAGAAATCTTTCTGGGACCACTGAAGTTCTGACACTTGTCAAACGAATTGTTGGTAGCTACAGGATAAACTTTGGGATGGATCTCTTAAGGAAACAGCCTTCGAATGATGAGGAGCTCTTCAAGATGGTGTGGCACCATTCTGATGCTCTTATATGTTGCACATGCAAGTCATTACCAGAATTCATATTTGCAAATGAAGCAGCTTTAGATATGCTGGAGACTACATCTGGAGGTTTACATGACCTGAGGTGGGATCAGACTCTAGATGAAACAGAAAGGAAAAATGCTTATTCAGATATTACCAAAGTTATGCAGCAGGGATTTGCATACCTCCCAGCTGGAATTCGCCTTTCAAGTATGGGTCGACCTGTTGCTTACGAGAGAGCGATGGCATGGAGTGTAGCCAATGACAGTGAAAGCATGCCATGTGTTGCTTTCATGTTCGTTAATTGGTCATTTTGATTCAGTTTTATAGGAACTGTTACAGACCCTTCTCAGTAATGGCCACTCTATATATATTGCCAGATTGTTAATACTTTTTGCATGAGTAGCTTGGTTTCTGAAATAAAAACCATCATAAAGGTGTACGTATAATGAATATAGTTTACTGAACAAATTCCATAGCTAAAACATT

Ace file of the UniGene sp_v2.0_unigene4650 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Class III homeodomain leucine zipper protein n=2 Tax=Pinaceae RepID=E7DX27_PICGL	-	-	92%
FL-Next	tr=Class III homeodomain leucine zipper protein; Picea glauca (White spruce) (Pinus glauca).	-	-	96%
Blast2go	class iii homeodomain-leucine zipper protein c3hdz1	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	75%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	75%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	75%
Blast2go	nucleus	GO:0005634	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	MEKHLA	IPR013978	-	0.0	-
Sma3	Lipid-binding START	IPR002913	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: E7DX27

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 621 - 851

Fln protein: QGCRCS*RSPGWFCDTRRMEILGAFTTSSGATVELLYSQMYSPTTLTQARDFCTLRYTSVLEDRNLVVCERSLNLGMVPPNEGFVRAEMLSSGYLIRPCGGVGSIVYIVDHMDLEAGRAPEVLRPMYESSAILAQKMTIAALRHLRSLAQEAAGEVVTGGTLQPAALRALSLRIARSFNDAINSFPEDGWFSVASDGMDDISISLNSSWSPRTVGLKCSSSNNLWSDGDGGVLCAKASMLLQNVPPAVLIRFLREHRSEWADWADCEHDMSCSATLRTRVYGAAALAGAELGRREVPMPLAHSEHQEIMELVKFEGYDSARDGALVSKEMYLLQLCNGIDETAIGDCAQLVFAPVDGALSDDIPLLPSGFRVIPLDTGFMDGYGPSCTLDLASMLDGGSDMDAAKTETGISANNMRSIVTIAFQFGYETHNCDSVSVAAHKYMRTVVASVQRVAMAIAPRVGSTLGLRNLSGTTEVLTLVKRIVGSYRINFGMDLLRKQPSNDEELFKMVWHHSDALICCTCKSLPEFIFANEAALDMLETTSGGLHDLRWDQTLDETERKNAYSDITKVMQQGFAYLPAGIRLSSMGRPVAYERAMAWSVANDSESMPCVAFMFVNWSF*

Protein Length: 622

Fln nts: AGCAGGGTTGCAGATGTTCTTAAAGATCGCCTGGATGGTTCTGTGATACCCGTCGAATGGAAATTTTAGGTGCATTCACAACTAGCAGTGGTGCAACGGTGGAGTTGTTGTACTCTCAGATGTATTCTCCAACCACTCTTACCCAAGCTCGAGACTTTTGCACATTACGATATACGTCGGTACTCGAGGACAGAAACTTGGTGGTTTGTGAACGTTCACTGAACCTGGGTATGGTACCTCCAAATGAAGGTTTTGTCAGAGCAGAGATGCTTTCAAGTGGATATTTAATCCGTCCATGTGGAGGTGTTGGATCAATTGTTTACATTGTTGATCACATGGACCTGGAGGCAGGACGAGCTCCAGAGGTATTAAGGCCTATGTATGAATCTTCTGCTATTCTTGCACAAAAAATGACTATTGCTGCCTTACGTCATTTACGTTCCTTAGCACAAGAGGCTGCTGGTGAGGTTGTGACTGGAGGTACTCTACAACCAGCTGCACTGCGAGCGCTGAGCCTTCGGATTGCCCGGAGCTTCAATGATGCTATAAACAGTTTTCCTGAAGATGGCTGGTTTTCAGTTGCTAGCGACGGGATGGATGATATCAGTATTTCACTTAATTCATCATGGAGTCCTAGAACAGTTGGTCTCAAGTGCAGTTCGTCCAACAACTTGTGGTCTGATGGTGATGGGGGTGTTTTATGTGCCAAGGCTTCGATGCTTTTGCAGAATGTTCCTCCAGCAGTATTGATACGTTTCCTTCGAGAGCATCGGTCGGAGTGGGCAGATTGGGCAGACTGTGAACATGATATGAGCTGTTCAGCCACATTGCGAACTCGTGTATATGGTGCTGCAGCTTTAGCTGGAGCTGAACTTGGCAGACGAGAAGTACCTATGCCTCTAGCCCATTCTGAACATCAAGAGATAATGGAGTTAGTCAAGTTTGAAGGTTATGACTCTGCTCGAGATGGTGCTTTAGTGTCAAAGGAGATGTACTTACTCCAGCTTTGCAATGGCATCGACGAAACTGCTATTGGTGATTGTGCACAGCTAGTTTTTGCCCCTGTTGATGGTGCCCTGTCTGATGATATACCATTGTTGCCATCTGGCTTTCGTGTCATACCGCTAGATACTGGCTTTATGGATGGATATGGTCCGTCTTGCACCCTCGATTTAGCTTCCATGCTGGATGGTGGTTCAGATATGGATGCGGCAAAGACTGAAACTGGAATTTCGGCTAACAATATGCGCTCTATTGTCACCATTGCATTTCAGTTTGGTTATGAGACACATAACTGTGACAGTGTGTCAGTTGCTGCCCACAAGTACATGCGTACTGTTGTTGCTTCTGTTCAGCGTGTTGCAATGGCAATCGCTCCCAGAGTGGGCTCAACACTGGGTTTAAGAAATCTTTCTGGGACCACTGAAGTTCTGACACTTGTCAAACGAATTGTTGGTAGCTACAGGATAAACTTTGGGATGGATCTCTTAAGGAAACAGCCTTCGAATGATGAGGAGCTCTTCAAGATGGTGTGGCACCATTCTGATGCTCTTATATGTTGCACATGCAAGTCATTACCAGAATTCATATTTGCAAATGAAGCAGCTTTAGATATGCTGGAGACTACATCTGGAGGTTTACATGACCTGAGGTGGGATCAGACTCTAGATGAAACAGAAAGGAAAAATGCTTATTCAGATATTACCAAAGTTATGCAGCAGGGATTTGCATACCTCCCAGCTGGAATTCGCCTTTCAAGTATGGGTCGACCTGTTGCTTACGAGAGAGCGATGGCATGGAGTGTAGCCAATGACAGTGAAAGCATGCCATGTGTTGCTTTCATGTTCGTTAATTGGTCATTTTGA___TTCAGTTTTATAGGAACTGTTACAGACCCTTCTCAGTAATGGCCACTCTATATATATTGCCAGATTGTTAATACTTTTTGCATGAGTAGCTTGGTTTCTGAAATAAAAACCATCATAAAGGTGTACGTATAATGAATATAGTTTACTGAACAAATTCCATAGCTAAAACATT

Fln Alignment:

Contig4650___PGWFCDTRRMEILGAFTTSSGATVELLYSQMYSPTTLTQARDFCTLRYTSVLEDRNLVVCERSLNLGMVPPNEGFVRAEMLSSGYLIRPCGGVGSIVYIVDHMDLEAGRAPEVLRPMYESSAILAQKMTIAALRHLRSLAQEAAGEVVTGGTLQPXXXXXXXXXXXXSFNDAINSFPEDGWFSVASDGMDDISISLNSSWSPRTVGLKCSSSNNLWSDGDGGVLCAKASMLLQNVPPAVLIRFLREHRSEWADWADCEHDMSCSATLRTRVYXXXXXXXXXXXXXEVPMPLAHSEHQEIMELVKFEGYDSARDGALVSKEMYLLQLCNGIDETAIGDCAQLVFAPVDGALSDDIPLLPSGFRVIPLDTGFMDGYGPSCTLDLASMLDGGSDMDAAKTETGISANNMRSIVTIAFQFGYETHNCDSVSVAAHKYMRTVVASVQRVAMAIAPRVGSTLGLRNLSGTTEVLTLVKRIVGSYRINFGMDLLRKQPSNDEELFKMVWHHSDALICCTCKSLPEFIFANEAALDMLETTSGGLHDLRWDQTLDETERKNAYSDITKVMQQGFAYLPAGIRLSSMGRPVAYERAMAWSVANDSESMPCVAFMFVNWSF
E7DX27______________PGWFCDCRRMEILGAFTTSSGATVELLYSQMYSPTTLTQARDFCTLRYTSVLEDRNLVVCERSLNLGMVPPNEGFVRAEMLSSGYLIRPCGGVGSIVYIVDHMDLEAGRAPEVLRPMYESSAILAQKMTISALRHLRSLAQEAAGEVVTGGTLQPAALRALSLRIARSFNDAINSFPEDGWFSVASDGIDDISISLNSSWSPRTVGLKCSSSNNLWSDGDGGVLCAKASMLLQNVPPAVLIRFLREHRSEWADWADCEHDVSCSATLRTRVYGAAALGGAELGRREVPMPLAHSEHQEIMELVKFEGYDSARDGALVSKEMYLLQLCNGIDETAIGDCAQLVFAPVDGALSDDIPLLPSGFRVIPLDTDFMDGYGMSCTLDLASMLEGGSDMDAAKTETGISSNNLRSIVTIAFQFGYETHNCDSVSVAARKYMRTVVASVQRVAMAIAPRVGSTLGLRNLSGTSEVLTLVKRIVGSYRINFGMDLLRKQPSNNEELFKMVWHHSDALICCTCKSLPEFIFANEAALDMLETTSGGLQDLRWDQTLDETEKKNAYSDITKVMQQGFAYLPAGIRLSSMGRPVAYERAMAWSIVDDNESMPCVAFMFVNWSF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain