SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4613

Length: 2278 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene4613
GGCCCGATTCCCGACTCTCTGGGCAAATGCAATTCTCTGGTTAAAGTCCGCTTGGGGCAAAATTATTTGAATGGTTGGATTCCTCAAGGCTTGCTTTACATGCCCAATCTGACTATGATAGAATTGCACAATAATTATCTCAGTGGGAGCATACCAGAGGGATCAATTAACAATGGATCCTCTGTGCTAGGGTTGATGAAGCTTTCTAATAATCGGTTCAGTGGGCCTCTTCCTTCATCCATAGGTAAATTAACTTCTGTGCAAAATGTTCTTCTCAATGGAAATCGGTTAACAGGGAATGTTCCACTAGAGATTGGCCAACTGGGGAAGGTTTCTAAGATTGATCTCAGCAACAACAGATTTTCTGGTATGATTCCCAAGGAGATTAGCCACTGTACTGTTCTGACATATCTTGATCTCAGCCAGAACGAGTTCAGTGGTCCCATCCCAGTGGAAATCACGAGGATGCGCATTCTGAACTATGTGAACTTATCGTTTAGAAATCACCTGAACGGGAGCCATTCCAAGAGAATTTGAGAACATGCAAAGTTTGTCTTCTGCAGATTTCTCTTACAATAATCTTTCAGGCCTTGTTCCAGAGAATGGTCTGTTTTCTTTGTTCAAAGCAAGCTCTTTTACAGGGAATCCAAACTTATGTGGACCACACTTGGACCCTTGCTCAATTGGGTCACCAATACAAGCCCACATCAAGGGCCGGGCTTCTCCCCCTTTGAAGCTTGTTTTAGCTCTGGGACTACTCCTCTGCTCGTTTGTTTTCGCGATTGGGGCCGTCCTTAAGGCCAGAGCCCTAAAGAAAGAGCGCGACGCAGGGTCCCTGAAAATGACAGCCTTCCAGAAACTCAACTTTGGAGGCGATGATGTCTTGGAATGCATAAAAGAGGACACCGTGATAGGCAGAGGAGGAGCGGGAATTGTGTACAGAGGCATCATGCCCAATGGGGAAGAAGTTGCAGTGAAGAAACTCATGGGCATTGGCAGCAGCCAAGACTCTTCACATGATCATGGTTTCTCTGCAGAAATCCAGACTCTGGGCAGCATCCGCCATCGCCACATAGTTAGATTGCTGGCGTTTTGTTCCAATCAGGACACCAATCTTCTGGTGTATGAATACATGCCCAATGGAAGCCTGGGCGAGCTGCTTCATGGAAACAAAGGCGGGCATTTGCATTGGCATACCAGATACAAAATTGCACTCGAGGCAGCCAAGGGGTTATGCTATCTTCACCATGATTGCTGCCCACTGATTGTTCATCGCGACGTGAAATCCAACAACATTCTTCTCGACTCCAACTTTGAAGCCCATGTTGCAGATTTCGGCCTTGCCAAGTTCTTGCAGGATTCTGGTACCTCTGAATGCATGTCTGCCATTGCAGGATCCTATGGCTACATTGCTCCAGAATACGCTTACACTCTGAAAGTGGACGAGAAGAGCGACGTATACAGCTTCGGGGTGGTTTTGCTTGAGCTGATTACTGGCAGAAAACCAGTGGGCGAAAGCGAATTTGGAGAGGGCGTGGACATCGTGCAGTGGGTGAAGAAAACGAGCAACTCGAAGAGAGAAGCAGTTCAGAAGATTATTGATCCCCGTCTCAGCACCTTTCCTCTGGAGGAGGCCATGCATATTTTCTTCGTGGCTCTGCTCTGCGTTGAAGAGCAAAGTGTGCAGAGACCCACAATGCGAGAAGTAGTGCAGATGCTAACAGATTCTCCAAAGGGTAAGCCCAATATGCAGAGTTTTTCGGTTTCGCCTGCCCATGGAAAGGAATCGAACAAGCCACTCTCCAGCCCGCCACCCGATCTCCTCAGCATATAAGCTGAATACGTACGTACCTGCTTTGGTCATAATTAATTTTCACATTCTGCCAATTTTTGCATGCAGTACTAAGTAGTTGCAATCTTCATCCCATAGTTACTCCTATTGTTCACTAATCTATTGTCTCTGTTATGCTAAATGGTCTGGATTCCCAGTATTTTGGAAACCAGGCTCTAAATAGGTGAGGATTAGGTAACATCCATAAGTGTCATTGCAATGTGTTTGGTCTGGATTCCCAGTATGTTGGAGACCAGGCTATAAATAGGTCAGGGTCATGTAACGTCCCACAAGTGTCATTGCAATATGTTTTCTTCAATCAAATAAGGTAGTTTTAGTGATTGTGAAAATGGGTCATGTAACGTCCCACAAGTGTAATTGCAATATGTTTTTTCTATCAAGCAGTATTAAATAAGATATTTTTCATGATTTTGAGAGGATGGATGC

Ace file of the UniGene sp_v2.0_unigene4613

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor-like protein kinase n=2 Tax=Glycine max RepID=C6ZRW9_SOYBN	-	-	70%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	28%
Blast2go	receptor-like protein kinase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-amylase.	EC:3.2.1.2	-	0.0	82%

Source	KEGGs	Term	Type	Identity
Blast2go	Starch and sucrose metabolism	00500		82%
Blast2go	Metabolic pathways	01100		82%
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	82%
Blast2go	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	82%

Source	GOs	Term	Type	Identity
Blast2go	regulation of meristem structural organization	GO:0009934	Biological Process	82%
Blast2go	response to water deprivation	GO:0009414	Biological Process	82%
Blast2go	microsporocyte differentiation	GO:0010480	Biological Process	82%
Blast2go	starch catabolic process	GO:0005983	Biological Process	82%
Blast2go	regulation of meristem growth	GO:0010075	Biological Process	82%
Blast2go	transmembrane receptor protein tyrosine kinase signaling pathway	GO:0007169	Biological Process	82%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	82%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	82%
Blast2go	gametophyte development	GO:0048229	Biological Process	82%
Blast2go	beta-amylase activity	GO:0016161	Molecular Function	82%
Blast2go	protein self-association	GO:0043621	Molecular Function	82%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	82%
Blast2go	MAP kinase kinase kinase activity	GO:0004709	Molecular Function	82%
Blast2go	receptor activity	GO:0004872	Molecular Function	82%
Blast2go	receptor serine/threonine kinase binding	GO:0033612	Molecular Function	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	82%
Blast2go	integral to membrane	GO:0016021	Cellular Component	82%
Blast2go	cytosol	GO:0005829	Cellular Component	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 612 - 998

Fln protein: GPIPDSLGKCNSLVKVRLGQNYLNGWIPQGLLYMPNLTMIELHNNYLSGSIPEGSINNGSSVLGLMKLSNNRFSGPLPSSIGKLTSVQNVLLNGNRLTGNVPLEIGQLGKVSKIDLSNNRFSGMIPKEISHCTVLTYLDLSQNEFSGPIPVEITRMRILNYVNLSFRNHLxxxxIPREFENMQSLSSADFSYNNLSGLVPENGLFSLFKASSFTGNPNLCGPHLDPCSIGSPIQAHIKGRASPPLKLVLALGLLLCSFVFAIGAVLKARALKKERDAGSLKMTAFQKLNFGGDDVLECIKEDTVIGRGGAGIVYRGIMPNGEEVAVKKLMGIGSSQDSSHDHGFSAEIQTLGSIRHRHIVRLLAFCSNQDTNLLVYEYMPNGSLGELLHGNKGGHLHWHTRYKIALEAAKGLCYLHHDCCPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRKPVGESEFGEGVDIVQWVKKTSNSKREAVQKIIDPRLSTFPLEEAMHIFFVALLCVEEQSVQRPTMREVVQMLTDSPKGKPNMQSFSVSPAHGKESNKPLSSPPPDLLSI*

Protein Length: 613

Fln nts: GGCCCGATTCCCGACTCTCTGGGCAAATGCAATTCTCTGGTTAAAGTCCGCTTGGGGCAAAATTATTTGAATGGTTGGATTCCTCAAGGCTTGCTTTACATGCCCAATCTGACTATGATAGAATTGCACAATAATTATCTCAGTGGGAGCATACCAGAGGGATCAATTAACAATGGATCCTCTGTGCTAGGGTTGATGAAGCTTTCTAATAATCGGTTCAGTGGGCCTCTTCCTTCATCCATAGGTAAATTAACTTCTGTGCAAAATGTTCTTCTCAATGGAAATCGGTTAACAGGGAATGTTCCACTAGAGATTGGCCAACTGGGGAAGGTTTCTAAGATTGATCTCAGCAACAACAGATTTTCTGGTATGATTCCCAAGGAGATTAGCCACTGTACTGTTCTGACATATCTTGATCTCAGCCAGAACGAGTTCAGTGGTCCCATCCCAGTGGAAATCACGAGGATGCGCATTCTGAACTATGTGAACTTATCGTTTAGAAATCACCTGxxxxxxxxxxxxATTCCAAGAGAATTTGAGAACATGCAAAGTTTGTCTTCTGCAGATTTCTCTTACAATAATCTTTCAGGCCTTGTTCCAGAGAATGGTCTGTTTTCTTTGTTCAAAGCAAGCTCTTTTACAGGGAATCCAAACTTATGTGGACCACACTTGGACCCTTGCTCAATTGGGTCACCAATACAAGCCCACATCAAGGGCCGGGCTTCTCCCCCTTTGAAGCTTGTTTTAGCTCTGGGACTACTCCTCTGCTCGTTTGTTTTCGCGATTGGGGCCGTCCTTAAGGCCAGAGCCCTAAAGAAAGAGCGCGACGCAGGGTCCCTGAAAATGACAGCCTTCCAGAAACTCAACTTTGGAGGCGATGATGTCTTGGAATGCATAAAAGAGGACACCGTGATAGGCAGAGGAGGAGCGGGAATTGTGTACAGAGGCATCATGCCCAATGGGGAAGAAGTTGCAGTGAAGAAACTCATGGGCATTGGCAGCAGCCAAGACTCTTCACATGATCATGGTTTCTCTGCAGAAATCCAGACTCTGGGCAGCATCCGCCATCGCCACATAGTTAGATTGCTGGCGTTTTGTTCCAATCAGGACACCAATCTTCTGGTGTATGAATACATGCCCAATGGAAGCCTGGGCGAGCTGCTTCATGGAAACAAAGGCGGGCATTTGCATTGGCATACCAGATACAAAATTGCACTCGAGGCAGCCAAGGGGTTATGCTATCTTCACCATGATTGCTGCCCACTGATTGTTCATCGCGACGTGAAATCCAACAACATTCTTCTCGACTCCAACTTTGAAGCCCATGTTGCAGATTTCGGCCTTGCCAAGTTCTTGCAGGATTCTGGTACCTCTGAATGCATGTCTGCCATTGCAGGATCCTATGGCTACATTGCTCCAGAATACGCTTACACTCTGAAAGTGGACGAGAAGAGCGACGTATACAGCTTCGGGGTGGTTTTGCTTGAGCTGATTACTGGCAGAAAACCAGTGGGCGAAAGCGAATTTGGAGAGGGCGTGGACATCGTGCAGTGGGTGAAGAAAACGAGCAACTCGAAGAGAGAAGCAGTTCAGAAGATTATTGATCCCCGTCTCAGCACCTTTCCTCTGGAGGAGGCCATGCATATTTTCTTCGTGGCTCTGCTCTGCGTTGAAGAGCAAAGTGTGCAGAGACCCACAATGCGAGAAGTAGTGCAGATGCTAACAGATTCTCCAAAGGGTAAGCCCAATATGCAGAGTTTTTCGGTTTCGCCTGCCCATGGAAAGGAATCGAACAAGCCACTCTCCAGCCCGCCACCCGATCTCCTCAGCATATAAGCTGAATACGTACGTACCTGCTTTGGTCATAATTAATTTTCACATTCTGCCAATTTTTGCATGCAGTACTAAGTAGTTGCAATCTTCATCCCATAGTTACTCCTATTGTTCACTAATCTATTGTCTCTGTTATGCTAAATGGTCTGGATTCCCAGTATTTTGGAAACCAGGCTCTAAATAGGTGAGGATTAGGTAACATCCATAAGTGTCATTGCAATGTGTTTGGTCTGGATTCCCAGTATGTTGGAGACCAGGCTATAAATAGGTCAGGGTCATGTAACGTCCCACAAGTGTCATTGCAATATGTTTTCTTCAATCAAATAAGGTAGTTTTAGTGATTGTGAAAATGGGTCATGTAACGTCCCACAAGTGTAATTGCAATATGTTTTTTCTATCAAGCAGTATTAAATAAGATATTTTTCATGATTTTGAGAGGATGGATGC

Fln Alignment:

Contig4613___GPIPDSLGKCNSLVKVRLGQNYLNGWIPQGLLYMPNLTMIELHNNYLSGSIPEGSINNGSSVLGLMKLSNNRFSGPLPSSIGKLTSVQNVLLNGNRLTGNVPLEIGQLGKVSKIDLSNNRFSGMIPKEISHCTVLTYLDLSQNEFSGPIPVEITRMRILNYVNLSFRNHLNGSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGAIPREFENMQSLSSADFSYNNLSGLVPENGLFSLFKASSFTGNPNLCGPHLDPCSIGSPIQAHIKGRASPPXXXXXXXXXXXCSFV-FAIGAVLKARAL--------KKERDAGSLKMTAFQKLNFGGDDVLECIKEDTVIGRGGAGIVYRGIMPNGEEVAVKKLMGIGSSQDSSHDHGFSAEIQTLGSIRHRHIVRLLAFCSNQDTNLLVYEYMPNGSLGELLHGNKGGHLHWHTRYKIALEAAKGLCYLHHDCCPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGT-SECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRKPVGESEFGEGVDIVQWVKKTSNSKREAVQKIIDPRLSTFPLEEAMHIFFVALLCVEEQSVQRPTMREVVQMLTDS---PKGKPNMQSFSVSPAHGKE
Q19AV8______________GEIPETLGNLAELTNLDLSINRLSGSIPESITKLDKVAQIELYQNLLSGPIPVAM--GELKALKRFDASMNMLNGSIPAGLGSL-NLESLNLYQNDLVGEIPPGLGSFASLTELKLFSNRLTGRLPESLGRYSDLQALDIADNLLSGSLPPDLCKNKKLEILSI-FNNVFAGNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGLIPSEFGNLK-LNTFDVSNNRLSGAVPLAFANPVYE-KSFLGNPELCSR--EAFNGTKSCSEERSERAKRQSWWWLLRCLFALSIIIFVLGLAWFYRRYRNFANAERKKSVDKSSWMLTSFHRLRFSEYEILDCLDEDNVIVSDGASNVYKATLNNGELLAIKRLWSIYKT-NASNDNGFQAEVDTLGKIRHKNIVKLWCCCSKSDSNLLVYEYMPNGSLGDLLHGPKASVLDWPIRYKIALGAAQGLAYLHHGCVPAIVHRDVKSNNILLDEDYVAHVADFGVAKILQSCARGADSMSAIAGSYGYIAPEYAYTLKVNEKSDIYSFGVVILELVTGRRPV-DPEFGENKDLVKWL-CNKIEKKNGLHEVLDPKLVDCFKEEMTMVMRVGLLCTSVLPINRPSMRRVVEMLQEANPHHKAKATGKDGKLSPYYCEE

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1598	12		87		0.992554
1676	88			11	0.923564
1678			11	88	0.923564
1954		11	83	5	0.999887
2099		86		13	0.999973
2161			11	77	0.968132
2223		20		80	0.995493
2224		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain