SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4594

Length: 1761 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene4594

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Os08g0518100 protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	32%
Blast2go	microtubule-associated protein	-	-	3.98316e-16	52%

Source	InterPros	Term	Type	e value	Identity
Sma3	Rab-GTPase-TBC domain	IPR000195	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: Q84Z87

Fln msg: your sequence is shorter than subject: 486 - 834

Fln protein: NCLPSSISEPNSVLNNMVPTHTSRSSSGNSTRRRLLDDKPERVESLVDSKVSKLSSLEGNDSPHASDKIEAPKQSTEDTTGKGHFDGNNDYQNERHLAVNIGEKDTNRSPVPNERRMNIVKCIDPDVISDQISESLSQLSCDKEDEQVTDLLVSDSRAFLTNNSEVASISANGRLDGPNMANREELQTNIRGKNSGSNEGSTVCTSKTSRKKVMPSNTVGISEVTGKHKSSSAGQFGKFRWIWSFGRNTTTGKGTDELSKNEEENSICSGDGRGLSESRSASQGKAGIADSPLPLVPDIDGSQASCNSDIHRANVEKSNTLEPLANKSDVQTEEQNSICSDDKRGLSESISNCQEKSGIVASSLPLVPEIDGSRPSCNSDVHGANVENDSILEPLDTKSVTSTLSKDNNASANLRSLGQSMLESIQVIESAFSQECTVKNKDETQLSSTERLEHLSRNFLAGKGQVTALVALTELRKISNILSQM*

Protein Length: 487

Fln nts: AGAACTGTTTGCCTTCTTCCATCAGTGAGCCCAATTCTGTCTTAAATAATATGGTTCCTACACATACAAGTAGATCTTCATCTGGAAATTCAACTAGACGTAGATTGCTAGATGATAAACCCGAGAGAGTTGAGTCGTTGGTTGATTCAAAGGTCAGCAAGTTGTCCTCGCTTGAGGGAAATGATAGCCCTCATGCCAGTGATAAAATTGAAGCACCAAAGCAAAGCACTGAAGACACAACAGGTAAAGGTCATTTCGATGGAAATAATGATTATCAAAATGAAAGGCACTTAGCTGTTAACATAGGCGAGAAAGACACTAATAGAAGTCCAGTGCCTAATGAGCGAAGAATGAATATTGTAAAATGCATCGATCCTGATGTTATTTCTGACCAAATAAGCGAGAGTTTGAGTCAATTGTCATGTGACAAGGAAGATGAGCAGGTGACAGACTTATTAGTTTCAGATTCTCGTGCATTCTTGACAAACAATTCAGAAGTTGCTAGCATTTCTGCCAATGGCAGATTGGATGGTCCAAACATGGCAAATAGAGAAGAGTTGCAGACAAATATTAGAGGTAAAAATAGTGGAAGTAATGAAGGTTCCACTGTCTGTACCTCAAAGACATCACGGAAGAAGGTGATGCCGAGCAATACAGTGGGGATTTCGGAAGTTACGGGGAAACATAAATCTTCATCAGCAGGTCAGTTTGGGAAGTTTCGTTGGATTTGGAGTTTTGGCCGAAATACCACAACTGGAAAAGGTACTGATGAACTTTCTAAAAATGAAGAAGAGAATAGCATATGTTCTGGTGACGGGAGGGGATTATCTGAATCAAGAAGTGCTTCTCAAGGAAAAGCAGGTATAGCAGATTCCCCATTGCCGCTGGTTCCTGACATTGATGGGTCTCAGGCCTCTTGTAATTCAGATATTCACAGGGCCAATGTGGAAAAGAGTAATACTTTGGAGCCTTTGGCTAACAAATCAGATGTTCAAACTGAAGAACAGAATAGCATATGTTCTGATGACAAGAGGGGATTATCTGAATCAATAAGCAACTGTCAAGAAAAGTCAGGTATAGTAGCTTCTTCTTTGCCACTAGTTCCTGAAATTGATGGGAGTCGGCCATCATGCAATTCAGATGTTCATGGGGCCAATGTTGAAAATGATAGTATTTTGGAGCCTTTGGATACCAAGTCAGTCACTTCAACACTCTCTAAAGACAATAATGCATCAGCCAATTTGCGAAGTTTGGGACAATCTATGCTTGAGAGTATTCAGGTCATTGAATCTGCCTTTTCGCAAGAATGTACAGTGAAGAACAAGGATGAAACTCAGCTGTCTTCAACAGAAAGGTTGGAGCATTTGTCAAGGAACTTCCTTGCAGGGAAAGGACAAGTCACAGCGTTGGTTGCGCTTACAGAGTTGCGGAAAATCAGTAATATTTTGTCACAAATGTGA___TGACGGTGTATCTACTATGCATTCTTTCTTCTATTATTAGAGCTCTATATTCACATTTTAGAAAAAAAGGCCTTTTCCATGGCTTGCAGCTGATCAATAATGTAGTTCCATTTTTGGAATGGAATTTGCAAAGATTGTTCTTTGCATATATGTAAATGTATATTAAGGAGTTCCAAGATTCACCAGTGAATACAATTTGAGAAAGTCTGGAGATCAAACCAGCCCTACAATTTTCCATGTTACCAAATTGTGGTTTACCGGTGAGCTTCGTGTAAATCCATTTTTTATCCTACAATGAAAG

Fln Alignment:

Contig4594___DIDGSQASCNSDIHRANVEKSNTL--EPLANKSDVQTEEQNSICSDDK----RGLSESISNCQEKSGIVASSLPLV----PEIDGSRPSCNSDVHGANVENDSILEPLDTKSVTST-----LSKDNNASANLRSLGQSMLESIQVIESAFSQECTVKNKDETQLSSTERLEHLSRNFLAGKGQVTALVALTELRKISNILSQM
Q84Z87______________DTDSESSSVTSNSFAGDHDRDEILKDEPSSSNDDNKTIQDSEAASSDKSPDRNGTSERAVVSNERKPFISKFQWLLKLGRPSVEGNMEKSSGETSADKQDGDTSCSPSDGNSNNSRGSVKLASGDKKVMGSLKNLGQNMLENIQVIESAFQQD----------RGQPGPVENFSNNILGGKGQVTAMAALTELRKISNLLSEM

SNPs (tot: 3)

Position	A %	G %	T %	Probability
1692		16	83	0.994512
1705	20	80		0.995493
1719	25	75		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain