SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4592

Length: 1112 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene4592

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9SE74_RICCO	-	-	2.0e-23	62%
FL-Next	tr=Transferase, transferring glycosyl groups, putative; Ricinus communis (Castor bean).	-	-	0.0	62%
Blast2go	sterol 3-beta-glucosyltransferase	-	-	5.25607e-25	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	5.25607e-25	73%

Source	KEGGs	Term	e value	Identity
Blast2go	Fructose and mannose metabolism	00051	5.25607e-25	73%
Blast2go	N-Glycan biosynthesis	00510	5.25607e-25	73%
Blast2go	Mucin type O-Glycan biosynthesis	00512	5.25607e-25	73%
Blast2go	Various types of N-glycan biosynthesis	00513	5.25607e-25	73%
Blast2go	Other types of O-glycan biosynthesis	00514	5.25607e-25	73%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	5.25607e-25	73%
Blast2go	Glycosaminoglycan biosynthesis - keratan sulfate	00533	5.25607e-25	73%
Blast2go	Lipopolysaccharide biosynthesis	00540	5.25607e-25	73%
Blast2go	Peptidoglycan biosynthesis	00550	5.25607e-25	73%
Blast2go	Glycerolipid metabolism	00561	5.25607e-25	73%
Blast2go	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563	5.25607e-25	73%
Blast2go	Sphingolipid metabolism	00600	5.25607e-25	73%
Blast2go	Glycosphingolipid biosynthesis - lacto and neolacto series	00601	5.25607e-25	73%
Blast2go	Glycosphingolipid biosynthesis - globo series	00603	5.25607e-25	73%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	5.25607e-25	73%
Blast2go	Carotenoid biosynthesis	00906	5.25607e-25	73%
Blast2go	Zeatin biosynthesis	00908	5.25607e-25	73%
Blast2go	Flavonoid biosynthesis	00941	5.25607e-25	73%
Blast2go	Anthocyanin biosynthesis	00942	5.25607e-25	73%
Blast2go	Flavone and flavonol biosynthesis	00944	5.25607e-25	73%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	5.25607e-25	73%
Blast2go	Betalain biosynthesis	00965	5.25607e-25	73%
Blast2go	Biosynthesis of type II polyketide products	01057	5.25607e-25	73%
Blast2go	Metabolic pathways	01100	5.25607e-25	73%
Blast2go	Biosynthesis of secondary metabolites	01110	5.25607e-25	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	5.25607e-25	73%
Blast2go	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	5.25607e-25	73%

Source	InterPros	Term	Type	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	Glycosyl transferase, family 28	IPR004276	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
116	33	66			0.997452
151			33	66	1.0
278	50		50		1.0
294		16		83	0.994512
302	50		50		1.0
348	16	83			0.994512
350		83	16		0.994512
351	83		16		0.994512
353	83			16	0.994512
391	16			83	0.994512
830	20	80			0.995493
831	20		80		0.995493
836	80	20			0.995493
892	16			83	0.994512
893		20	80		0.995493
896			80	20	0.995493
908	20		80		0.995493
916		20	80		0.995493
917		20	80		0.995493
939	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain