SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4565

Length: 2327 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene4565
CGTCGTGACCTTGGCTGTCACTCAAGTTTCGTTTGTGGCGGATCAAGTGCTTGACAGACGGCGAGCTGGCAGGTGCCTTGTTGAAAACCTTTGAGCATTTTGATGCCGGGGCCGTTGCAGATTGGCGTTTTTCATCGTCGTGACCTGTGGCTGTCACTCAATTTTGTGGCTTTAATGCTGGGAGAATCGCAGAGGACTTCAAGATTTTGCAAAGGTGGAGTAATTGAAGAGATTCACGCTGGCTGAGTTGAGGGAACTGGTGCTTCTTGCGTCCCTGCTGCTGCGCTCGAAATATTTCAGCCGCAAGCAGCGGACATTGAAGTGCCAGGAGCTTAATAGAGAAGCAATGGCGTGGTTCATAAGAATGTGGGGGTTTTCGTTTGTTGTGATTTTTATTGTCATTGTTTTCCCTTCGCAGCAGTCATGGTCTCCGGCGGAGGCGATTCGATCGTCTCCTCTCGATTTCCAGCGGAACGGAGAGGGCTTTAAGTTAACGGCAGTTCCGAATCAGCTGACTTTCAGCGATTTTTTATTTTCCTTTAAAGAGGCACCGGCATTTCGAAATGGGGGAGAATGCGCCTTATCTGGCCTCAATGGAACGGTTTGTGATCCTGCGTATGTGCATATAGCGATAACTCTTGATGCCGAGTACTTGCGAGGTTCGATTGCTGCCGTGCTCTCTGTTCTTCAACACGCTTCTTGTCCGGAAAACGTCTTCTTTCATTTTCTGGTGTCTGGAATGGAGACGAAACTTCAGAATCTAGTGAGATCCACGTTTCCTTACCTGAAATTCAAGGTTTATTCTTTCAATGCAGATCTCGTTAAAGGCTTGATTTCCACTTCCGTTAGACAGGCTCTGGAACAGCCTCTAAATTATGCTCGCAACTACTTGGCGGGCATGCTGGAGCCTTGTGTGGAAAGAGTCATTTATCTCGACTCCGATCTCGTTGTGGTAGACGATGTGTCGAAGCTGTGGAACATCAGTCTGGGGGCTCGAACCGTGGGCGCTCCGGAATATTGCCACGCCAATTTTACCAAGTATTTCTCGGCTGCATTCTGGTCAGACGAAGAACTTTCCAGAACATTCCAAGGTCGGAAGCCCTGCTATTTTAACACGGGGGTAATGGTGATCGATCTGGCTAAATGGCGGCTGAAGAATTACACGGAGGAGTTGGAGCACTGGATGGAGGTCCAGAAGGAGAAGCGGATTTACGAGCTGGGATCGTTACCGCCATTCCTTCTGGTTTTCGCCGGAAGTGTCGAGCCGGTGGAGCACAGGTGGAATCAGCACGGGCTAGGTGGGGATAATGTGATTGGAAGCTGCCGGAATTTGCACCCTGGACCGGTAAGTTTGCTGCATTGGAGTGGTAAGGGCAAACCGTGGCTGCGCCTGGACTCGAAGAAACCCTGCCCGTTGGATAATCTATGGGCCCCTTACGATCTCTATGTCTCGTCATCTCAAGCTTAGGAGGAAATCGAGGCTCCTGATGGTGAGGGGGCTTGGTTTAAAGCTCTTGAGCTGCTTGCTATATTTTCACAGCCTGAAAGCTCGGCCGATCTTGGGGATTTTCTGTTGAACACAGCTATTATTTCTGTCGTTATCTATGATTACCATTTTAGAGCTTATTTTCTCTAAAAAAGCAGTCAGTACTCTGAAGAAGCACTGCACAGATATTTTTTTATCCTCATCAGAACTCGCCATTGAAGCAGCAGCGGCAGCACCATAACGACACATTCTATGGCCCTAACAGAGGTTTGCCCTTCGTATCTTTGCAGCTTAGCGTTAGTTGTAAAGATTGATTAATAAAAGATTCGCAATTATTCTACTGCATAGGGGGATTTAAAGGCTTCCTTGCTCAGGAAGTTCGCCATTTTTATCACAGTACAGTCGATGATTATGATGCTGACGATGAAGATGATGATTATTGGCCCTTTTTGGATATCAATTTATTTCATTTCAGCCATTTTTTTGTAATAAGCGGATACACATGGTCTTGGTCTTGGGCATGCACATTCTTTTGTTATATTGCATTCATTCCTTGTGACTATATGTCGGTTTTGGGTTCTGTTAGCAGCTGGGAATTCGTGAGGGATTCCTTCTGAATTCACCTTCTTTGTATTGTTTGCCAGCAGAAATCTTGATGTATCTTGGACACACATTTGTTTCGCGGCTGTCTAATTGATTAGTAGCCTCTTACCCTCCATCTATACGCTACGCTGGGGCTAAGAATGTGATATTCCCATTTTCTCCAGAACACACAATATTAATGGTACTTCATCATGTCATTTTTATAGATTTACTTGTCATGATTCATATGACTATTACC

Ace file of the UniGene sp_v2.0_unigene4565 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable galacturonosyltransferase-like 7 n=2 Tax=Arabidopsis RepID=GATL7_ARATH	-	-	64%
FL-Next	sp=Probable galacturonosyltransferase-like 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	67%
Blast2go	galacturonosyltransferase-like 6	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polygalacturonate 4-alpha-galacturonosyltransferase.	EC:2.4.1.43	-	0.0	76%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	76%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate biosynthetic process	GO:0016051	Biological Process	76%
Blast2go	polygalacturonate 4-alpha-galacturonosyltransferase activity	GO:0047262	Molecular Function	76%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	76%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 8	IPR002495	-	0.0	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8VYF4

Fln msg:

Fln protein: MAWFIRMWGFSFVVIFIVIVFPSQQSWSPAEAIRSSPLDFQRNGEGFKLTAVPNQLTFSDFLFSFKEAPAFRNGGECALSGLNGTVCDPAYVHIAITLDAEYLRGSIAAVLSVLQHASCPENVFFHFLVSGMETKLQNLVRSTFPYLKFKVYSFNADLVKGLISTSVRQALEQPLNYARNYLAGMLEPCVERVIYLDSDLVVVDDVSKLWNISLGARTVGAPEYCHANFTKYFSAAFWSDEELSRTFQGRKPCYFNTGVMVIDLAKWRLKNYTEELEHWMEVQKEKRIYELGSLPPFLLVFAGSVEPVEHRWNQHGLGGDNVIGSCRNLHPGPVSLLHWSGKGKPWLRLDSKKPCPLDNLWAPYDLYVSSSQA*

Protein Length: 375

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTTCGTTTGTGGCGGATCAAGTGCTTGACAGACGGCGAGCTGGCAGGTGCCTTGTTGAAAACCTTTGAGCATTTTGATGCCGGGGCCGTTGCAGATTGGCGTTTTTCATCGTCGTGACCTGTGGCTGTCACTCAATTTTGTGGCTTTAATGCTGGGAGAATCGCAGAGGACTTCAAGATTTTGCAAAGGTGGAGTAATTGAAGAGATTCACGCTGGCTGAGTTGAGGGAACTGGTGCTTCTTGCGTCCCTGCTGCTGCGCTCGAAATATTTCAGCCGCAAGCAGCGGACATTGAAGTGCCAGGAGCTTAATAGAGAAGCA_-_ATGGCGTGGTTCATAAGAATGTGGGGGTTTTCGTTTGTTGTGATTTTTATTGTCATTGTTTTCCCTTCGCAGCAGTCATGGTCTCCGGCGGAGGCGATTCGATCGTCTCCTCTCGATTTCCAGCGGAACGGAGAGGGCTTTAAGTTAACGGCAGTTCCGAATCAGCTGACTTTCAGCGATTTTTTATTTTCCTTTAAAGAGGCACCGGCATTTCGAAATGGGGGAGAATGCGCCTTATCTGGCCTCAATGGAACGGTTTGTGATCCTGCGTATGTGCATATAGCGATAACTCTTGATGCCGAGTACTTGCGAGGTTCGATTGCTGCCGTGCTCTCTGTTCTTCAACACGCTTCTTGTCCGGAAAACGTCTTCTTTCATTTTCTGGTGTCTGGAATGGAGACGAAACTTCAGAATCTAGTGAGATCCACGTTTCCTTACCTGAAATTCAAGGTTTATTCTTTCAATGCAGATCTCGTTAAAGGCTTGATTTCCACTTCCGTTAGACAGGCTCTGGAACAGCCTCTAAATTATGCTCGCAACTACTTGGCGGGCATGCTGGAGCCTTGTGTGGAAAGAGTCATTTATCTCGACTCCGATCTCGTTGTGGTAGACGATGTGTCGAAGCTGTGGAACATCAGTCTGGGGGCTCGAACCGTGGGCGCTCCGGAATATTGCCACGCCAATTTTACCAAGTATTTCTCGGCTGCATTCTGGTCAGACGAAGAACTTTCCAGAACATTCCAAGGTCGGAAGCCCTGCTATTTTAACACGGGGGTAATGGTGATCGATCTGGCTAAATGGCGGCTGAAGAATTACACGGAGGAGTTGGAGCACTGGATGGAGGTCCAGAAGGAGAAGCGGATTTACGAGCTGGGATCGTTACCGCCATTCCTTCTGGTTTTCGCCGGAAGTGTCGAGCCGGTGGAGCACAGGTGGAATCAGCACGGGCTAGGTGGGGATAATGTGATTGGAAGCTGCCGGAATTTGCACCCTGGACCGGTAAGTTTGCTGCATTGGAGTGGTAAGGGCAAACCGTGGCTGCGCCTGGACTCGAAGAAACCCTGCCCGTTGGATAATCTATGGGCCCCTTACGATCTCTATGTCTCGTCATCTCAAGCTTAG___GAGGAAATCGAGGCTCCTGATGGTGAGGGGGCTTGGTTTAAAGCTCTTGAGCTGCTTGCTATATTTTCACAGCCTGAAAGCTCGGCCGATCTTGGGGATTTTCTGTTGAACACAGCTATTATTTCTGTCGTTATCTATGATTACCATTTTAGAGCTTATTTTCTCTAAAAAAGCAGTCAGTACTCTGAAGAAGCACTGCACAGATATTTTTTTATCCTCATCAGAACTCGCCATTGAAGCAGCAGCGGCAGCACCATAACGACACATTCTATGGCCCTAACAGAGGTTTGCCCTTCGTATCTTTGCAGCTTAGCGTTAGTTGTAAAGATTGATTAATAAAAGATTCGCAATTATTCTACTGCATAGGGGGATTTAAAGGCTTCCTTGCTCAGGAAGTTCGCCATTTTTATCACAGTACAGTCGATGATTATGATGCTGACGATGAAGATGATGATTATTGGCCCTTTTTGGATATCAATTTATTTCATTTCAGCCATTTTTTTGTAATAAGCGGATACACATGGTCTTGGTCTTGGGCATGCACATTCTTTTGTTATATTGCATTCATTCCTTGTGACTATATGTCGGTTTTGGGTTCTGTTAGCAGCTGGGAATTCGTGAGGGATTCCTTCTGAATTCACCTTCTTTGTATTGTTTGCCAGCAGAAATCTTGATGTATCTTGGACACACATTTGTTTCGCGGCTGTCTAATTGATTAGTAGCCTCTTACCCTCCATCTATACGCTACGCTGGGGCTAAGAATGTGATATTCCCATTTTCTCCAGAACACACAATATTAATGGTACTTCATCATGTCATTTTTATAGATTTACTTGTCATGATTCATATGACTATTACC

Fln Alignment:

Contig4565___MAWFIRMWGFSXXXXXXXXXFPSQQSWSPAEAIRSSPLDFQRNGEGFKLTAVPNQLTFSDFLFSFKEAPAFRNGGECALSGLNGTVCDPAYVHIAITLDAEYLRGSIAAVLSVLQHASCPENVFFHFLVSGMETKLQNLVRSTFPYLKFKVYSFNADLVKGLISTSVRQALEQPLNYARNYLAGMLEPCVERVIYXXXXXXXXXXXSKLWNISLGARTVGAPEYCHANFTKYFSAAFWSDEELSRTFQGRKPCYFNTGVMVIDLAKWRLKNYTEELEHWMEVQKEKRIYELGSLPPFLLVFAGSVEPVEHRWNQHGLGGDNVIGSCRNLHPGPVSLLHWSGKGKPWLRLDSKKPCPLDNLWAPYDLY
Q8VYF4______________MLWIMRFSGLFSAALVIIVLSPSLQSFPPAEAIRSSHLDAYLR---FPSSDPPPHR------FSFRKAPVFRNAADCAAADIDSGVCNPSLVHVAITLDFEYLRGSIAAVHSILKHSSCPESVFFHFLVS--ETDLESLIRSTFPELKLKVYYFDPEIVRTLISTSVRQALEQPLNYARNYLADLLEPCVRRVIYLDSDLIVVDDIAKLWMTKLGSKTIGAPEYCHANFTKYFTPAFWSDERFSGAFSGRKPCYFNTGVMVMDLERWRRVGYTEVIEKWMEIQKSDRIYELGSLPPFLLVFAGEVAPIEHRWNQHGLGGDNVRGSCRDLHPGPVSLLHWSGSGKPWFRLDSRRPCPLDTLWAPYDLY

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
2045	11		88		0.923564
2169			40	60	1.0
2170		40	60		1.0
2171	60	40			1.0
2173	40			60	1.0
2174	40		60		1.0
2177	60	40			1.0
2178	40		60		1.0
2184	33		66		1.0
2185	33		66		1.0
2186	33			66	1.0
2189	40	60			1.0
2190	10		90		0.90298
2192		90		10	0.90298
2197	66			33	0.997452
2198	66		33		0.997452
2200	66	33			0.997452
2208			33	66	0.997452
2209		66	33		0.997452
2212	33		66		0.997452
2214	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain