SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4488

Length: 2260 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene4488
CGTCGTGACCTTGGCTGTCACTCGTCGTGACCTTGGCTGTCACTCAGGAGTGCCTGAGTTCCAGATTTTCTGTATTCTTTTTCTTTCTGCTTGCGTGAGGATTGTGTTACGATATTTACCTTCATGGCTGTCTACGTATCAGGAGCTTCAATGATGATGGACGAGGAAGCAAAAATTGAAGCAGAAGTAGCAGAGGTCCAAACATGGTGGAACTCAGAGCGATTTCGCCTCACACAGAGGCCATACACTGCAAAGGATGTAGTTCGTCTGAGAGGCACCATGCGCCAGAGCTATGCGTCCAATGAGCTGGCCAAAAAGCTATGGAGGACACTCAAAACCCACCAGGCAAATAAAACAGCTTCTCGGACATTTGGCGCTCTGGATCCAGTGCAGGTTGCCATGATGGCCAAGTACTTGGATACAATCTATGTCTCTGGGTGGCAGTGTTCTTCCACTCACACGTCCACAAATGAACCAGGCCCTGATCTTGCGGACTATCCCTATGACACTGTCCCTAACAAAGTGGAGCACCTCTTCTTTGCCCAGCAATATCACGATAGAAAACAGAGGGAGGCCAGAATGAGTATGAGCAGAGAAGAGAAGGCTAGGACACCTCATATTGACTACCTCAGGCCCATCATCGCAGATGGAGACACTGGTTTTGGTGGGACAACTGCAACAGTTAAGCTCTGTAAGCTCTTTGTAGAAAGGGGTGCAGCAGGCGTGCACATTGAGGATCAGGCCTCTGTGACAAAAAAGTGTGGTCACATGGCTGGCAAAGTCTTGGTTTCTACTGCAGAGCATATCAATAGGCTTGTGGCTGCCCGGTTGCAATTTGATATCATGGGAGTAGAGACTGTTCTCATAGCTAGAACGGATGCAGTAGCAGCAACTTTGATTCAGACCAATATTGATGGGAGAGACCATCCTTTTATTCTTGGGGTCACCAACCCCAAGCTTAAGGGAAGGCCTTTGGCTACTGTGCTGGCAGAAGCCATGGCTAATGGAAAAACTGGCACAGAGTTGCAAGATGTAGAGGACTAAAATGGATGGGTATGGCCAATTTGAGGTTGTTTTCTGACGTTGTAGGGGATGCTATTAGGAGCCTGGCTATCCCACAGCAAGAGAAGGCTAATAGGATCAATCTCTGGTTCAACAAGATTGATCAGCTCCCCCACTTTGAAGCCCGGGAACTGGCCGAGAAATTGGGGGTTTCTGATGTGTTTTGGGATTGGGATCTTCCTAGAACCAGAGAAGGGTTTTATAGGTTCCAAGGTTCCACCAAGGCTGCTATTGTCAGGGGTTGGGCTTTTGGACCCCATGCAGACCTAATTTGGATGGAGACATCAAGCCCCGACATGGTAGAATGTAAGGAGTTTGCAGAAGGGGTGAAATCAAAGCATCCAGACCTGATGTTGGCCTACAATCTGTCACCTTCTTTCAATTGGGATGCTTCTCGCATGAGCGATGAACAGATGATGAACTTCATTCCTCAGATAGCACAGTTGGGCTTTTGCTGGCAGTTCATCACTCTGGCTGGATTCCATGCCGATGCATTAGTCATCGACACCTTTGCAAGGGACTATGCCAAGAAGGGCATGCTAGCTTACGTCCAGCAGATTCAAAGACAAGAAAGGGCTAATGGGGTTGACACTCTCGCCCACCAGAAGTGGTCTGGTGCTAATTACTATGATACTCTTCTCAAGACTGTGCAGGGTGGGATCTCTGCCACTGCTGCAATGGGTAAAGGAGTAACTGAAGATCAATTCAAGGTAGATGCATGGAGTAGTGATGGAAGAACACTAGATCTGACTAACCATGGTGTGGTTGCCCGGGCCAGAATGTAATCTGTTCAGTTTGTCTGCTTGATAGTATATTCTAGATATGCATATTTTTATATTTAAGGTTATGAAAGAGCATGAGAGCAGGATGGATTCCTGTTGGACAATTTGATTGGTTGGACAATTTGATTCATCAGACTGGAGAAACTTCAATCCAGTTGCCATTTAATATTAGATTGCTATTCGGTTATTGCTGTTGGGTTTAATTTAGTGGAAGAGAGTATATTACAAAATTGTTGGGCAAACTTTTGCTGCTGCCTTAACAGCATGGAATTTGGCTATACACTGATGCCATCATTATTTCTCTTCTGTAAAAGCTTATTTTGCATCAATATTTATTGATCATCAATAAATTAGAATTTATTACTGTATACCTTCATGTTCATCAGTATCTACCTTCATGTGTCACATCCTTAACC

Ace file of the UniGene sp_v2.0_unigene4488

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Isocitrate lyase n=1 Tax=Pinus taeda RepID=Q41084_PINTA	-	-	90%
FL-Next	sp=Isocitrate lyase; Pinus taeda (Loblolly pine).	-	-	99%
Blast2go	isocitrate lyase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Isocitrate lyase.	EC:4.1.3.1	-	0.0	91%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glyoxylate and dicarboxylate metabolism	00630		0.0	91%
Blast2go	Metabolic pathways	01100		0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	tricarboxylic acid cycle	GO:0006099	Biological Process	91%
Blast2go	glyoxylate cycle	GO:0006097	Biological Process	91%
Blast2go	protein binding	GO:0005515	Molecular Function	91%
Blast2go	isocitrate lyase activity	GO:0004451	Molecular Function	91%
Blast2go	glyoxysome	GO:0009514	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Isocitrate lyase/phosphorylmutase	IPR000918	-	-
Sma3	Isocitrate lyase	IPR006254	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q41084

Fln msg: Separated hits, possible frame ERROR between 1041 and 1044,

Fln protein: MAVYVSGASMMMDEEAKIEAEVAEVQTWWNSERFRLTQRPYTAKDVVRLRGTMRQSYASNELAKKLWRTLKTHQANKTASRTFGALDPVQVAMMAKYLDTIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREEKARTPHIDYLRPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQASVTKKCGHMAGKVLVSTAEHINRLVAARLQFDIMGVETVLIARTDAVAATLIQTNIDGRDHPFILGVTNPKLKGRPLATVLAEAMANGKTGTELQDVExxKWMGMANLRLFSDVVGDAIRSLAIPQQEKANRINLWFNKIDQLPHFEARELAEKLGVSDVFWDWDLPRTREGFYRFQGSTKAAIVRGWAFGPHADLIWMETSSPDMVECKEFAEGVKSKHPDLMLAYNLSPSFNWDASRMSDEQMMNFIPQIAQLGFCWQFITLAGFHADALVIDTFARDYAKKGMLAYVQQIQRQERANGVDTLAHQKWSGANYYDTLLKTVQGGISATAAMGKGVTEDQFKVDAWSSDGRTLDLTNHGVVARARM*

Protein Length: 576

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTCGTGACCTTGGCTGTCACTCAGGAGTGCCTGAGTTCCAGATTTTCTGTATTCTTTTTCTTTCTGCTTGCGTGAGGATTGTGTTACGATATTTACCTTC_-_ATGGCTGTCTACGTATCAGGAGCTTCAATGATGATGGACGAGGAAGCAAAAATTGAAGCAGAAGTAGCAGAGGTCCAAACATGGTGGAACTCAGAGCGATTTCGCCTCACACAGAGGCCATACACTGCAAAGGATGTAGTTCGTCTGAGAGGCACCATGCGCCAGAGCTATGCGTCCAATGAGCTGGCCAAAAAGCTATGGAGGACACTCAAAACCCACCAGGCAAATAAAACAGCTTCTCGGACATTTGGCGCTCTGGATCCAGTGCAGGTTGCCATGATGGCCAAGTACTTGGATACAATCTATGTCTCTGGGTGGCAGTGTTCTTCCACTCACACGTCCACAAATGAACCAGGCCCTGATCTTGCGGACTATCCCTATGACACTGTCCCTAACAAAGTGGAGCACCTCTTCTTTGCCCAGCAATATCACGATAGAAAACAGAGGGAGGCCAGAATGAGTATGAGCAGAGAAGAGAAGGCTAGGACACCTCATATTGACTACCTCAGGCCCATCATCGCAGATGGAGACACTGGTTTTGGTGGGACAACTGCAACAGTTAAGCTCTGTAAGCTCTTTGTAGAAAGGGGTGCAGCAGGCGTGCACATTGAGGATCAGGCCTCTGTGACAAAAAAGTGTGGTCACATGGCTGGCAAAGTCTTGGTTTCTACTGCAGAGCATATCAATAGGCTTGTGGCTGCCCGGTTGCAATTTGATATCATGGGAGTAGAGACTGTTCTCATAGCTAGAACGGATGCAGTAGCAGCAACTTTGATTCAGACCAATATTGATGGGAGAGACCATCCTTTTATTCTTGGGGTCACCAACCCCAAGCTTAAGGGAAGGCCTTTGGCTACTGTGCTGGCAGAAGCCATGGCTAATGGAAAAACTGGCACAGAGTTGCAAGATGTAGAGGAxxxAAAATGGATGGGTATGGCCAATTTGAGGTTGTTTTCTGACGTTGTAGGGGATGCTATTAGGAGCCTGGCTATCCCACAGCAAGAGAAGGCTAATAGGATCAATCTCTGGTTCAACAAGATTGATCAGCTCCCCCACTTTGAAGCCCGGGAACTGGCCGAGAAATTGGGGGTTTCTGATGTGTTTTGGGATTGGGATCTTCCTAGAACCAGAGAAGGGTTTTATAGGTTCCAAGGTTCCACCAAGGCTGCTATTGTCAGGGGTTGGGCTTTTGGACCCCATGCAGACCTAATTTGGATGGAGACATCAAGCCCCGACATGGTAGAATGTAAGGAGTTTGCAGAAGGGGTGAAATCAAAGCATCCAGACCTGATGTTGGCCTACAATCTGTCACCTTCTTTCAATTGGGATGCTTCTCGCATGAGCGATGAACAGATGATGAACTTCATTCCTCAGATAGCACAGTTGGGCTTTTGCTGGCAGTTCATCACTCTGGCTGGATTCCATGCCGATGCATTAGTCATCGACACCTTTGCAAGGGACTATGCCAAGAAGGGCATGCTAGCTTACGTCCAGCAGATTCAAAGACAAGAAAGGGCTAATGGGGTTGACACTCTCGCCCACCAGAAGTGGTCTGGTGCTAATTACTATGATACTCTTCTCAAGACTGTGCAGGGTGGGATCTCTGCCACTGCTGCAATGGGTAAAGGAGTAACTGAAGATCAATTCAAGGTAGATGCATGGAGTAGTGATGGAAGAACACTAGATCTGACTAACCATGGTGTGGTTGCCCGGGCCAGAATGTAA___TCTGTTCAGTTTGTCTGCTTGATAGTATATTCTAGATATGCATATTTTTATATTTAAGGTTATGAAAGAGCATGAGAGCAGGATGGATTCCTGTTGGACAATTTGATTGGTTGGACAATTTGATTCATCAGACTGGAGAAACTTCAATCCAGTTGCCATTTAATATTAGATTGCTATTCGGTTATTGCTGTTGGGTTTAATTTAGTGGAAGAGAGTATATTACAAAATTGTTGGGCAAACTTTTGCTGCTGCCTTAACAGCATGGAATTTGGCTATACACTGATGCCATCATTATTTCTCTTCTGTAAAAGCTTATTTTGCATCAATATTTATTGATCATCAATAAATTAGAATTTATTACTGTATACCTTCATGTTCATCAGTATCTACCTTCATGTGTCACATCCTTAACC

Fln Alignment:

Contig4488___MAVYVSGASMMMDXXXXXXXXXXXXQTWWNSERFRLTQRPYTAKDVVRLRGTMRQSYASNELAKKLWRTLKTHQANKTASRTFGALDPVQVAMMAKYLDTIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREEKARTPHIDYLRPIIXXXXXXXXXXXXXVKLCKLFVERGAAGVHIEDQASVTKKCGHMAGKVLVSTAEHINRLVAARLQFDIMGVETVLIARTDAVAATLIQTNIDGRDHPFILGVTNPKLKGRPLATVLAEAMANGKTGTELQDVEDxKWMGMANLRLFSDVVGDAIRSLAIPQQEKANRINLWFNKIDQLPHFEARELAEKLGVSDVFWDWDLPRTREGFYRFQGSTKAAIVRGWAFGPHADLIWMETSSPDMVECKEFAEGVKSKHPDLMLAYNLSPSFNWDASRMSDEQMMNFIPQIAQLGFCWQFITLAGFHADALVIDTFARDYAKKGMLAYVQQIQRQERANGVDTLAHQKWSGANYYDTLLKTVQGGISATAAMGKGVTEDQFKVDAWSSDGRTLDLTNHGVVARARM
Q41084______________MAVYVQGASMMMDEEAKIEAEVAEVQTWWNSERFRLTQRPYTAKDVVRLRGTMRQSYASNELAKKLWRTLKTHQANKTASRTFGALDPVQVAMMAKYLDTIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPHIDYLRPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQASVTKKCGHMAGKVLVSTAEHINRLVAARLQFDIMGVETVLIARTDAVAATLIQTNIDGRDHPFILGVTNPKLKGKPLATVLAEAMANGKTGTELQDVEDxKWMGMANLRLFSDVVGDAIRSLAIPQQEKSNRINLWFNKIDQLSHFEARELAEKLGVSDVFWDWDLPRTREGFYRFQGSTKAAILRGWAFGPHADLIWMETSSPDMVECKRFAEGVKSKHPDLMLAYNLSPSFNWDASRMSDEQMMNFIPQIAQLGFCWQFITLAGFHADALVIDTFARDYAKKGMLAYVQQIQRQERANGVDTLAHQKWSGANYYDTLLKTVQGGISGTAAMGKGVTEDQFKADAWSSDGRALDLTNHGVVARARM

SNPs (tot: 100)

Position	A %	C %	G %	T %	Probability
527		11	88		0.923564
528	88			11	0.923564
577		44		55	1.0
580	88			11	0.923564
581	88			11	0.923564
582		11		88	0.923564
584	88	11			0.923564
613	72		9	18	0.999994
615		81	18		0.999994
617		81	18		0.999994
619		18		81	0.999994
620	72	27			1.0
624	81		18		0.999994
627	81			18	0.999994
835	88	11			0.923564
836			11	88	0.923564
838		11		88	0.923564
840	88			11	0.923564
841			11	88	0.923564
843		11		88	0.923564
845	88			11	0.923564
849		11	88		0.923564
850	88			11	0.923564
854		11	88		0.923564
855	88			11	0.923564
856		11	88		0.923564
879	87			12	0.992554
1009	66	33			0.997452
1023	75	25			0.996473
1026		25		75	0.996473
1028		75		25	0.996473
1029	75		25		0.996473
1031		25	75		0.996473
1032	75	25			0.996473
1036	75		25		0.996473
1039	75			25	0.996473
1042		25	75		0.996473
1047	25		25		1.0
1048	80			20	0.995493
1049	66	16	16		0.988813
1050	83		16		0.994512
1052		33	66		1.0
1053		16	83		0.994512
1054	66			16	0.988813
1057	16		83		0.994512
1058		33	66		1.0
1059		16		83	0.994512
1060	66		16	16	0.988813
1062		16	83		0.994512
1063	16		83		0.994512
1066		83	16		0.994512
1067	83			16	0.994512
1068	83	16			0.994512
1069	16			83	0.994512
1070		16		83	0.994512
1072		16	83		0.994512
1134	62	25		12	1.0
1136			75	25	1.0
1140		12	25		1.0
1143	62	37			1.0
1144	12			87	0.992554
1145	75			25	1.0
1148	75	25			1.0
1150		75	25		1.0
1151	75			25	1.0
1152	75	25			1.0
1153	25			75	1.0
1158	25		75		1.0
1477	82		5	11	0.999919
1494			10	84	0.999846
1497	89		10		0.999919
1499	10			89	0.999919
1503		88		11	0.999937
1504	88		11		0.999937
1506	88	11			0.999937
1645		10	90		0.90298
1647			90	10	0.90298
1651	90	10			0.90298
1652		10		90	0.90298
1653			90	10	0.90298
1654			90	10	0.90298
1657		10		90	0.90298
1660	90			10	0.90298
1694		11		88	0.999937
1846		80		13	0.999961
1847		86		13	0.999973
1848	86	13			0.999973
1850	86	13			0.999973
1854			8	91	0.999766
1855	87		4	8	0.999414
1856	83	8	8		0.998844
1859	12			83	1.0
1898	92			7	0.999532
2035		59	40		1.0
2084			23	76	1.0
2090	27		72		1.0
2109		76		23	1.0
2211	14			85	0.993533
2222	33			66	0.997452
2224			33	66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain