SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4476

Length: 1953 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene4476
TAGTATCACCAGCTCAAATCCTTCCTTCAGCAGAGCCCTCCAACGATCAAATCTTGCTACCATTTTCCTGTGAGTCAGTGTAATGTGCAGACCTGAGCAAGAATTCATTGCTCTATCAGCTTAATGCGCAGGCCTGAGCAATAATTAAATCGAATTGGGGGCAGTTAATTAGTCCGAGGAAGCTGAATTTAAGCATCTGCAGAGAAGTTCTTGAGTACTTTGCCTATTTTATCCTTTCGTGGTGACCTTGGGTGGCACTCAAAGTCGGGCAAATGGAAGGATTGTCACAGACAGAAAACAGCAGTGCAGTAACCATGAAATTGAAAGTAACGAGGCATGAACCCACGCTGGTTGTTCCAGCTGAGGCTACAGAGAATCATGTCTATTTTCTTTCAAATCTTGATCAGAACATTGCTGTCATAGTCCAGACAGTGTACTGTTTCAAGGCCAGTGCCGAGATGGGGACTGAGAGGCCAAGTGAGGTGATCCGAGAGGCTCTGAGCAAGGTTTTAGTTGCTTATTATCCTCTTGCAGGAAGAGTTGGCATCAGCCCAGAAGGGAAGCTGAACATTCATTGTACTGGTGAGGGGGCTGTGTTTGTGGAAGCTGATGCAGACTGTGTAATCGAGGACATTGGAGATATGACGAAGCCTGATCCTTCTAAGCTGGAATGCCTGGTTTACAATATTCCCGGTGCCAAGAATATATTAGAAATACCTCCCCTTGTTGTTCAGGTCACAACATTCAAATGTGGAGGGTTCGTGCTGGGCCTGGGGATGAACCACTGCATGTTCGATGGAATCGGGGCCATGGAATTCGTGAACTCGTGGGCTGAAACAGCACGCGGCGTGCCACTGTCGGTACCGCCATTCATGGACCGATCGTTGCTGAAGGCCAGGTCTCCTCCAAAAATAGAATGCCCCCACCTGGAATTCTCAGAGATCAAGGAAGTCTCCAGCGATTCCACCGAGCAGCTCCAGAGCGAAGAAATCGTGTACAGATCCTTCTGTTTCACACCAGAGAAGCTAGACGAACTCAAGAAGCAAGCCATGGAGGACGGGGTTCTCACCAGGTGCTCTACCTTCGAAGCCCTCTCCGCACTGGTCTGGAAGTGCCGCAGCAACGCCCTCAACATGGCGCCCAACCAAGAAGCCAAGCTGCTCTTCGCAGTCGACGGGAGGGCCAAATTCGAGCCCCCGCTGCCCAAGGGCTACTTCGGGAACGGAATAGTCCTCACTTCGGCCATCGGCCGGGCCGGAGAATTGCGGGAAAAGCCCTTATCATTTGGAGTGGGGCTAATTCAGAAAGCCATAGGGATGATTACAGACAAATTCATGAGATCCGCCATTGATTATTTTGAAGTAACTCGTTCCAGGCCCTCGCTTACTGCAACTCTGCTTCTTACTACCTGGTCTCGGCTCTCGTTCCACACGACAGATTTTGGGTGGGGAGAACCAGTCCAGTCTGTGCCTGTTACTCTGCCTGCCAGGGAAGTGGTTCTGTTTCTGTCCCATGGAAAACAGAAGAAGAGCATTAATATTCTCCTCGGCCTTCCCGAAAGCGCCATGGACCGTTTCGAAGGATCTCTACAAATGTAGCAGTCCTCAGTCTCATCATAATCAGTATTGACTAGTCACATCGTACCTGTAATTGGGCGTAGTTATTCTTGTTAGATTTTTACCTCCAAAAAAAAACGCAGATTCAATGAATTATTGTTGTTCTAGTGTGTGGATAAACAGCCCCATTTGCTGTTCCCTCAACCATTATTCTAGTGCTACTGCATACTATTGCTCGCCCTGTTATTTTCCATAGTTAGGTTGACCTTTCCTGGTTGCTTTCTCAATAATTATTGGAATGTAATTATCCTTGGGTAGTTGGAGTTTGGCCAGAAAGCCAGTGACATGTCTCAGCTACTCAAATTAATTCTATGAACCACAATTAGTTTGTGTTATT

Ace file of the UniGene sp_v2.0_unigene4476

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Taxadien-5-alpha-ol O-acetyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RAB0_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	hydroxycinnamoyl shikimate quinate hydroxycinnamoyltransferase-like protein	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.3.1.11-	-	0.0	81%
Blast2go	Anthranilate N-benzoyltransferase.	EC:2.3.1.144	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	suberin biosynthetic process	GO:0010345	Biological Process	81%
Blast2go	cell wall pectin biosynthetic process	GO:0052325	Biological Process	81%
Blast2go	tyramine N-feruloyltransferase activity	GO:0050366	Molecular Function	81%
Blast2go	hydroxycinnamoyltransferase activity	GO:0050734	Molecular Function	81%
Blast2go	anthranilate N-benzoyltransferase activity	GO:0047672	Molecular Function	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Transferase	IPR003480	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKL2

Fln msg:

Fln protein: MEGLSQTENSSAVTMKLKVTRHEPTLVVPAEATENHVYFLSNLDQNIAVIVQTVYCFKASAEMGTERPSEVIREALSKVLVAYYPLAGRVGISPEGKLNIHCTGEGAVFVEADADCVIEDIGDMTKPDPSKLECLVYNIPGAKNILEIPPLVVQVTTFKCGGFVLGLGMNHCMFDGIGAMEFVNSWAETARGVPLSVPPFMDRSLLKARSPPKIECPHLEFSEIKEVSSDSTEQLQSEEIVYRSFCFTPEKLDELKKQAMEDGVLTRCSTFEALSALVWKCRSNALNMAPNQEAKLLFAVDGRAKFEPPLPKGYFGNGIVLTSAIGRAGELREKPLSFGVGLIQKAIGMITDKFMRSAIDYFEVTRSRPSLTATLLLTTWSRLSFHTTDFGWGEPVQSVPVTLPAREVVLFLSHGKQKKSINILLGLPESAMDRFEGSLQM*

Protein Length: 443

Fln nts: TAGTATCACCAGCTCAAATCCTTCCTTCAGCAGAGCCCTCCAACGATCAAATCTTGCTACCATTTTCCTGTGAGTCAGTGTAATGTGCAGACCTGAGCAAGAATTCATTGCTCTATCAGCTTAATGCGCAGGCCTGAGCAATAATTAAATCGAATTGGGGGCAGTTAATTAGTCCGAGGAAGCTGAATTTAAGCATCTGCAGAGAAGTTCTTGAGTACTTTGCCTATTTTATCCTTTCGTacTtACCTTGgaTctCACTCAAAGTCGGGCAA_-_ATGGAAGGATTGTCACAGACAGAAAACAGCAGTGCAGTAACCATGAAATTGAAAGTAACGAGGCATGAACCCACGCTGGTTGTTCCAGCTGAGGCTACAGAGAATCATGTCTATTTTCTTTCAAATCTTGATCAGAACATTGCTGTCATAGTCCAGACAGTGTACTGTTTCAAGGCCAGTGCCGAGATGGGGACTGAGAGGCCAAGTGAGGTGATCCGAGAGGCTCTGAGCAAGGTTTTAGTTGCTTATTATCCTCTTGCAGGAAGAGTTGGCATCAGCCCAGAAGGGAAGCTGAACATTCATTGTACTGGTGAGGGGGCTGTGTTTGTGGAAGCTGATGCAGACTGTGTAATCGAGGACATTGGAGATATGACGAAGCCTGATCCTTCTAAGCTGGAATGCCTGGTTTACAATATTCCCGGTGCCAAGAATATATTAGAAATACCTCCCCTTGTTGTTCAGGTCACAACATTCAAATGTGGAGGGTTCGTGCTGGGCCTGGGGATGAACCACTGCATGTTCGATGGAATCGGGGCCATGGAATTCGTGAACTCGTGGGCTGAAACAGCACGCGGCGTGCCACTGTCGGTACCGCCATTCATGGACCGATCGTTGCTGAAGGCCAGGTCTCCTCCAAAAATAGAATGCCCCCACCTGGAATTCTCAGAGATCAAGGAAGTCTCCAGCGATTCCACCGAGCAGCTCCAGAGCGAAGAAATCGTGTACAGATCCTTCTGTTTCACACCAGAGAAGCTAGACGAACTCAAGAAGCAAGCCATGGAGGACGGGGTTCTCACCAGGTGCTCTACCTTCGAAGCCCTCTCCGCACTGGTCTGGAAGTGCCGCAGCAACGCCCTCAACATGGCGCCCAACCAAGAAGCCAAGCTGCTCTTCGCAGTCGACGGGAGGGCCAAATTCGAGCCCCCGCTGCCCAAGGGCTACTTCGGGAACGGAATAGTCCTCACTTCGGCCATCGGCCGGGCCGGAGAATTGCGGGAAAAGCCCTTATCATTTGGAGTGGGGCTAATTCAGAAAGCCATAGGGATGATTACAGACAAATTCATGAGATCCGCCATTGATTATTTTGAAGTAACTCGTTCCAGGCCCTCGCTTACTGCAACTCTGCTTCTTACTACCTGGTCTCGGCTCTCGTTCCACACGACAGATTTTGGGTGGGGAGAACCAGTCCAGTCTGTGCCTGTTACTCTGCCTGCCAGGGAAGTGGTTCTGTTTCTGTCCCATGGAAAACAGAAGAAGAGCATTAATATTCTCCTCGGCCTTCCCGAAAGCGCCATGGACCGTTTCGAAGGATCTCTACAAATGTAG___CAGTCCTCAGTCTCATCATAATCAGTATTGACTAGTCACATCGTACCTGTAATTGGGCGTAGTTATTCTTGTTAGATTTTTACCTCCAAAAAAAAACGCAGATTCAATGAATTATTGTTGTTCTAGTGTGTGGATAAACAGCCCCATTTGCTGTTCCCTCAACCATTATTCTAGTGCTACTGCATACTATTGCTCGCCCTGTTATTTTCCATAGTTAGGTTGACCTTTCCTGGTTGCTTTCTCAATAATTATTGGAATGTAATTATCCTTGGGTAGTTGGAGTTTGGCCAGAAAGCCAGTGACATGTCTCAGCTACTCAAATTAATTCTATGAACCACAATTAGTTTGTGTTATT

Fln Alignment:

Contig4476___MEGLSQTENSSAVTMKLKVTRHEPTLVVPAEATENHVYFLSNLDQNIAVIVQTVYCFKASAEMGTERPSEVIREALSKVLVAYYPLAGRVGISPEGKLNIHCTGEGAVFVEADADCVIEDIGDMTKPDPSKLECLVYNIPGAKNILEIPPLVVQVTTFKCGGFVLGLGMNHCMFDGIGAMEFVNSWAETARGVPLSVPPFMDRSLLKARSPPKIECPHLEFSEIKEVSSDSTEQLQSEEIVYRSFCFTPEKLDELKKQAMEDGVLTRCSTFEALSALVWKCRSNALNMAPNQEAKLLFAVDGRAKFEPPLPKGYFGNGIVLTSAIGRAGELREKPLSFGVGLIQKAIGMITDKFMRSAIDYFEVXXXXXXXXXXXXXXXXXXXXFHTTDFGWGEPVQSVPVTLPAREVVLFLSHGKQKKSINILLGLPESAMDRFEG
B8LKL2______________MEGLLQTENSSAVTMKLNVTRHEPTMVAPAEATENHVYFLSNLDQNIAVTVQTVYCFKASEEMGKERPSEVIREALRKVLVAYYPLAGRIGISPEGKLNIHCTGEGAVFVEADADCVIEDIGDMTKPDPSKLECLVYNIPGAKNILEVPPLVVQVTTFKCGGFVLGLGMNHCMFDGIGAMEFVNSWAETARGLPLSVPPFMDRSLLRARSPPKMEYPHLEFAEIKEISSESTE-LHSEELVYRSFCFTAEKLDELKKEAMEDGVLTKCSTFEALSALVWRSRSKALNMAPNQEAKLLFAVDGRAKFEPPLPRGYFGNGIVLTSAIGKAGELAEKPLSFGVGRIQKAIGMITDKFMRSAIDYFEITRSRPSLTATLLITTWSRLSFHTTDFGWGEPVQSVPVTLPAREVVLFLSHGKERKSINVLLGLPESAMDRFQG

SNPs (tot: 80)

Position	A %	C %	G %	T %	Probability
440		33		66	0.997452
441			33	66	0.997452
444	66		33		0.997452
445	66			33	0.997452
447	33		66		0.997452
450	66			33	0.997452
451			66	33	0.997452
452			33	66	0.997452
455		33	33	33	0.997753
457	66			33	0.997452
458		33	66		0.997452
460		33		66	0.997452
461			66	33	0.997452
462		33	66		0.997452
463	33		66		0.997452
510		50		50	1.0
551		66		33	1.0
553		66	33		1.0
554	66			33	1.0
557	66	33			1.0
558		33	66		1.0
559			66	33	1.0
560			66	33	1.0
561	66		33		1.0
567	66			33	1.0
571		33		66	1.0
731		64		35	1.0
827		63	36		1.0
958	16		83		0.994512
959	33	66			0.997452
1022	33		66		1.0
1105			80	20	0.995493
1106		20		80	0.995493
1107		80	20		0.995493
1109		20	80		0.995493
1110	20		80		0.995493
1239		25		75	0.996473
1258		20	80		0.995493
1260		80		20	0.995493
1263			80	20	0.995493
1267	80	20			0.995493
1271		80	20		0.995493
1272		20	80		0.995493
1273			80	20	0.995493
1275	80			20	0.995493
1276	80	20			0.995493
1278	80	20			0.995493
1279			80	20	0.995493
1281	20	80			0.995493
1294	83	16			0.994512
1297		16	83		0.994512
1299			83	16	0.994512
1301	16	83			0.994512
1302		16		83	0.994512
1303	83	16			0.994512
1304	83			16	0.994512
1306			16	83	0.994512
1308	83			16	0.994512
1310	83			16	0.994512
1311	83	16			0.994512
1313		16	83		0.994512
1314		83		16	0.994512
1378		70	30		1.0
1379	70			30	1.0
1381	27		72		1.0
1384		72		27	1.0
1386	9	63	27		1.0
1390	9		27		1.0
1395		27	63		1.0
1396	18	81			0.999994
1468	81			18	1.0
1600		10		89	0.999919
1603	89	10			0.999919
1605		89		10	0.999919
1608	10			89	0.999919
1612		89		10	0.999919
1613	89		10		0.999919
1616		89	10		0.999919
1822	35		64		1.0
1858			64	35	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain