SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4474

Length: 1801 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene4474

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ran GTPase binding protein, putative n=1 Tax=Ricinus communis RepID=B9SJF7_RICCO	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	ran gtpase binding	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	signal transduction	GO:0007165	Biological Process	80%
Blast2go	Ran GTPase binding	GO:0008536	Molecular Function	80%
Blast2go	phosphatidylinositol binding	GO:0035091	Molecular Function	80%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	80%
Blast2go	chromatin binding	GO:0003682	Molecular Function	80%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Brevis radix-like domain	IPR013591	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNM4

Fln msg: your sequence is longer than subject: 520 - 286

Fln protein: VHGMCSDAWQPQLVETLANNAVDLVACGEYHTCAVTMTGELYTWGDGSRHLGLLGHGNDVSHWIPKKISGSLDGIQVSSIACGPWHTALVSSTGQLFTFGDGTFGVLGHGDCKSVSYPKEVESLKGLRAVGVACGVWHTAAIVEVMVAHSSAGCCSGKLFTWGDGDKGRLGHGDRETKLVPTCVPTLIDHNFWQIACGHSLTVGLTTAGQVFTMGSIVYGQLGNPKSDGKQPCLVEGKLANETVEQIACGAYHVAALTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDKHVKDIACGSTFTTAICLHKWVSGADQSVCSGCRQSFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPNPNKPYRVCDSCFIKLKKALELAMVSNNNKRNMIPRRPNDNIDRSDRPETKNSKTQGLPPEAKSQTKRGKKSDTSASNRASLGTALPHLKDIKFWVQLIHNYQKHFFPFHSLETLHELSLHSQGDPVHLVLQHLLLLWQALLLPKLLLMALRRQMHL*

Protein Length: 521

Fln nts: GGTTCATGGAATGTGCTCAGACGCTTGGCAACCACAGCTTGTTGAAACTTTAGCTAACAATGCTGTTGATCTTGTTGCCTGTGGTGAATATCACACTTGTGCAGTTACCATGACTGGTGAGTTGTACACATGGGGCGATGGTAGCCGTCACCTTGGTCTCCTAGGACATGGGAATGATGTGAGTCATTGGATACCAAAGAAGATATCTGGTTCTCTAGATGGAATCCAAGTTTCTTCCATTGCTTGTGGACCTTGGCACACTGCATTAGTAAGTTCGACTGGGCAGCTGTTTACATTTGGGGATGGAACCTTTGGAGTATTGGGGCATGGGGATTGTAAAAGTGTGTCATACCCCAAGGAAGTAGAGTCTCTGAAGGGTTTAAGAGCTGTTGGTGTTGCTTGTGGTGTGTGGCATACAGCTGCGATTGTGGAAGTCATGGTAGCACATTCTAGTGCTGGTTGTTGCTCAGGAAAATTGTTCACATGGGGTGATGGAGATAAAGGTCGGCTTGGACATGGAGACAGAGAGACAAAGCTTGTACCAACTTGTGTGCCAACACTCATAGATCATAACTTCTGGCAAATTGCATGTGGGCATAGTCTTACTGTAGGCTTGACGACAGCAGGTCAGGTTTTTACCATGGGTAGTATTGTTTATGGTCAGCTTGGAAACCCCAAATCTGATGGCAAGCAGCCTTGTCTGGTAGAAGGAAAGCTGGCAAATGAAACTGTCGAACAGATAGCTTGTGGAGCATATCATGTAGCGGCTCTGACATCTAAAAATGAGGTTTATACTTGGGGAAAAGGAGCCAATGGAAGATTGGGTCATGGAGATGTGGAAGATCGTAAGACACCTACACTGGTTGAGGCGTTGAAAGACAAGCATGTTAAGGACATTGCATGTGGCTCCACTTTTACGACAGCTATATGTCTTCACAAGTGGGTATCAGGTGCAGATCAATCAGTATGTTCAGGATGCAGGCAGTCATTTGGATTCACCAGAAAGCGTCACAACTGCTATAATTGTGGATTGGTACACTGCCATTCTTGTAGTTCTAAAAAGGCTTTGAGAGCTGCACTTGCTCCCAATCCAAATAAACCATATCGTGTATGTGATTCTTGTTTTATCAAATTGAAGAAAGCATTGGAACTAGCTATGGTATCAAATAACAATAAAAGAAATATGATACCAAGGCGTCCAAATGACAACATAGATAGATCAGATAGGCCAGAAACAAAAAATTCAAAAACACAGGGGCTTCCTCCAGAAGCAAAATCTCAAACTAAGCGTGGTAAGAAGTCTGATACATCAGCTTCAAATCGAGCTTCCCTAGGCACTGCTTTGCCACATTTAAAGGATATTAAGTTTTGGGTTCAGTTGATCCACAACTATCAAAAACACTTCTTTCCCTTCCACAGTCTAGAAACACTTCACGAGCTGTCTCTCCATTCTCAAGGAGACCCAGTCCACCTCGTTCTGCAACACCTACTCCTACTATGGCAGGCCTTGCTTCTTCCAAAACTCTTGTTGATGGCCTTACGAAGACAAATGCACTTATGA___CTCAGGAGATTATGAATTTGCGGGACCAGGTTGGGAACTTGGCACAGAGATGCAGACAACAAGAAGCAGAGTTACAACAGACAGCAAAGCAAGCACAAGAGGCTATGTCTTTGGCTGCTGCAGAATCTCGCAAATGTAAAGCTGCAAAGGAGGCAATCAAATCCCTTAGTGCCCAGGTTATTTTATGCAGAATTCAAGCTTGAATATATTTGTGAAAAATGGATTTTGACTTTCAAAGTC

Fln Alignment:

Contig4474___HGMCSDAWQPQLVETLANNAVDLVACGEYHTCAVTMTG-ELYTWGDGSRHLGLLGHGNDVSHWIPKKISGSLDGIQVSSIACGPWHTALVSSTGQLFTFGDGTFGVLGHGDCKSVSYPKEVESLKGLRAVGVACGVWHTAAIVEVMVAHSSAGCCSGKLFTWGDGDKGRLGHGDRETKLVPTCVPTL
B8LNM4______________HGDAEDRPMPTFVSALDGCEITSVICGADHTTAYSDSRLVVYSWGWGD--FGRLGHGNSSDLFIPHAIK-TLQGLQIKQIACGDSHCLAVTINGEVQSWGRNQNGQLGVGDNIDHSFPQRVKLPAEEEVVQVSCGWRHTVAITG-----------KSNVFSWGRGTSGQLGHGDILDRNMPVLIEAL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1379	33		66		0.997452
1521	20			80	0.995493
1523		80		20	0.995493
1524	80	20			0.995493
1568		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain