SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4462

Length: 1319 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene4462

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger family-like protein (Fragment) n=4 Tax=Picea sitchensis RepID=E0ZH37_PICSI	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	zinc finger family-like protein	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	67%
Blast2go	ligase activity	GO:0016874	Molecular Function	67%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	67%
Blast2go	cytoplasm	GO:0005737	Cellular Component	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQH3

Fln msg:

Fln protein: METGPASNSIANQAHGNSRNERSGKGRRRRAAAEQRRIEQERWGRWLTTPNHDVAEDDDEENAEVYTSLQAPTRSVRRRNRRRNNRQNAAHLDQLQLEVDDYIDDNLHSSSFNAEERSWGSNSDHYEIEIALAVSLSLAQSADGSSDHNMNHSGQEYGSDLSYESLAQLENVMCVTPAVVVNSLSVNVFGGNKGSHELVEPAEVCAICQCEYESGDTIMSLPCAHSFHHLCGSEWLLKYSKLCPICKLDVVEKHEG*

Protein Length: 258

Fln nts: GAAAGACCAGAAAGAAACGTGCCATCCAAGATTTGGGAATTCTGAAATTGCTGGGCAGAACCCATCACATAAAGAACTTTCAACTAAGAAACGTGCCATCCAAGTTTTGGGAACTCTGAAATTGCTGGGCAGAACCCATCACATAAAGAACTTTGACCTGCTGTCTTTTTATTTCAATCTACCAAGTCGGTAGTGTGGTTGAGAGGAAAT_-_ATGGAGACAGGACCTGCATCAAACAGCATCGCCAATCAGGCACACGGGAATTCAAGGAACGAGAGATCTGGAAAAGGGCGTAGACGAAGGGCTGCAGCCGAACAGAGACGAATTGAACAAGAAAGGTGGGGTAGATGGCTTACTACTCCTAATCATGATGTAGCCGAAGATGATGATGAGGAGAATGCAGAAGTCTATACGAGCTTGCAGGCTCCCACAAGATCTGTCAGACGGCGTAACCGTCGAAGGAATAACCGGCAAAATGCCGCCCATCTTGATCAATTACAATTGGAGGTCGACGACTACATTGACGACAATCTGCATTCGTCCAGCTTCAATGCAGAAGAACGTTCTTGGGGTTCTAATTCTGACCATTACGAGATTGAAATTGCTCTGGCTGTTTCACTCTCATTAGCCCAATCCGCTGATGGAAGTTCAGATCATAATATGAATCACAGTGGACAGGAGTATGGCTCGGATCTGTCATATGAGAGTCTTGCACAGCTGGAAAATGTAATGTGCGTTACTCCAGCAGTTGTTGTAAACTCGTTATCAGTGAATGTATTTGGGGGAAATAAAGGTTCGCATGAATTGGTCGAACCAGCCGAAGTATGCGCCATATGCCAATGTGAGTATGAAAGTGGGGATACAATCATGTCATTGCCTTGTGCCCATTCTTTCCATCACCTCTGTGGGTCAGAATGGCTTCTCAAGTACTCAAAGCTATGTCCTATTTGTAAGCTAGATGTTGTTGAGAAACATGAAGGCTGA___TGATTGGAATTAATTGCTCAAAATTGTAGCCGAAACTGTATAATAAATAAATTGGTGAATCTGTCCATAACTCAACCATCTTTACCTGTAAATATCATTCATTCATTGTGGCAAGCTTCATATTTTCTGAACACAGGAAATATTGTAAATTGTTGGTCACAAATTCAATAACGAACCACTGCTGGATTTGTATTCATGAAGTTCAAGCAATCTGGAATGCTGTTAGAACATTGGCTTGTATGGCCATTATTGTTTTAAGATCTATGGAAAGTCCAAAAACTTTTACAGAAATAATGCTGCGTGGTTGTGTCAGAAAAGAACATGAATAAATTTCAAAC

Fln Alignment:

Contig4462___NQAHGNSRNERSGKGXXXXXXXXXXXXXXXXWGRWLTTPNHXXXXXXXXXXXXXYTSLQAPTRSVXXXXXXXXXXQNAAHLDQLQLEVDDYIDDNLHSSSFNAEERSWGSNSDHYEIEIXXXXXXXXXXXXDGSSDHNMNHSGQEYGSDLSYESLAQLENVMCVTPAVVVNSLSVNVFGGNKGSHELVEPAEVCAICQCEYESGDTIMSLPCAHSFHHLCGSEWLLKYSKLCPICKLDVVEK
B8LQH3______________NQANRNSRNERSGKGRRRRAAAEQRRIDQQRWGQYITDEEDE-------------TAVGMAPRSGNRRRARRNNRNNSTSSHHL----EDYYQDEL---AFHANQPR-NENCEDFDLEMALSLSLSLEDPPLYSGSIEYSNQGT---VNMSYESLVQLENVKCVAPANIVNSMPILTFDGNKSEQGSADEIEKCTICQCEYEFGDQIISLPCAHGFHNPCGAEWLLNHSKLCPICKHNVMDQ

SNPs (tot: 76)

Position	A %	C %	G %	T %	Probability
180	83	16			0.994512
181	83		16		0.994512
188	83			16	0.994512
189	83			16	0.994512
191			14	85	0.993533
193			85	14	0.993533
197		14	85		0.993533
200	14		85		0.993533
347			42	57	1.0
364		87	12		0.992554
366	87		12		0.992554
368		12		87	0.992554
370	87			12	0.992554
373	87	12			0.992554
378		12	87		0.992554
379	12	87			0.992554
381			87	12	0.992554
382	87	12			0.992554
447	42	57			1.0
514	75			25	0.996473
518		75		25	0.996473
519			25	75	0.996473
522	75	25			0.996473
526	75		25		0.996473
530	75			25	0.996473
533	75	25			0.996473
537	33		66		0.997452
539	75	25			0.996473
540			25	75	0.996473
546		60	40		1.0
547	80			20	0.995493
548		20	80		0.995493
550	20			80	0.995493
551		20		80	0.995493
552		80	20		0.995493
553	60		20	20	0.99255
554	60	20		20	0.99255
555			20	80	0.995493
558	60			40	1.0
559		20	80		0.995493
561	50	25		25	0.995533
562		25	50	25	0.995533
563	75	25			0.996473
564	75	25			0.996473
565		50		25	0.995533
566		25	75		0.996473
567	25			75	0.996473
597			83	16	0.994512
598	83	16			0.994512
599			16	83	0.994512
603	83	16			0.994512
604	83	16			0.994512
610		83	16		0.994512
612		16	83		0.994512
613	16		83		0.994512
714		25		75	0.996473
729		30		70	1.0
732	70	30			1.0
733	70		30		1.0
736	30			70	1.0
737		30	70		1.0
739			70	30	1.0
741			30	70	1.0
742	70		30		1.0
745	10		30		1.0
746		70		30	1.0
749		30	70		1.0
750	10			30	1.0
782		10		90	0.90298
787		10	90		0.90298
789			90	10	0.90298
790		10	90		0.90298
792	90			10	0.90298
793	90		10		0.90298
795		10		90	0.90298
796	90	10			0.90298

SSRs (tot: 1)

Start position	End position	Sequence	Length
1076	1088	TCAT TCAT TCAT T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain