SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4408

Length: 925 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene4408 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transcription initiation factor TFIID subunit D4 [Arabidopsis thaliana] gb\|AAR28022.1\| TAF5 [Arabidopsis thaliana] gb\|AED93406.1\| transcription initiation factor TFIID subunit D4 [Arabidopsis thaliana]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	71%
Blast2go	transcription initiation factor tfiid subunit 5-like	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	75%
Blast2go	transferase activity	GO:0016740	Molecular Function	75%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	75%
Blast2go	nucleus	GO:0005634	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	TFIID subunit, WD40-associated region	IPR007582	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D7SUX1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 409 aas, your sequence is shorter than subject: 230 - 676

Fln protein: MEEDQIEKAVLAYLKKRGFHQTQISLQEEHQKNPSAAKTDPEVAKLILSFAESENGPVRYREEYSKLRSWTYNSLDLYKHELLRVLYPVFIHCFMDLVAKGHTQEARSFFQSFREDHEALYLHDLQKLEGVLSPQHLEEMEFAHSLRQNKVNIKMCQYSYELLLQYLLKTECKIMLGIVNERINFQVSPGQPCGPYSSEGEVITLTGSSQEAVEQINQKEIRWGYWKTL*

Protein Length: 231

Fln nts: TGGATTGAAATTTTTTGAAAGGCAAACGAACCAAACTGCTCCCATGATGAGCATTTGAACACAGATTTGGGAAGGGAAAACCAATATATAGTTCGGCGGACATTCACAGAGCAGCATTAGCTCGGGGGCGTGCTCTGCGGAAGTAACAAAA_-_ATGGAAGAAGACCAAATAGAAAAAGCAGTTTTGGCGTACTTGAAGAAGAGGGGTTTCCACCAAACTCAAATCTCGCTTCAAGAAGAACATCAGAAGAATCCCTCCGCCGCCAAGACGGACCCCGAGGTTGCCAAGCTAATTCTCTCATTCGCCGAGTCAGAGAATGGGCCAGTGCGATACAGAGAGGAATACAGCAAGCTGCGTTCGTGGACTTATAATTCCTTGGACTTGTACAAGCATGAACTACTACGTGTACTTTATCCAGTTTTCATCCACTGTTTCATGGACCTAGTGGCGAAGGGTCACACTCAGGAAGCTCGTTCATTCTTTCAAAGTTTCCGGGAAGACCATGAAGCCCTATATCTTCATGACTTGCAAAAGTTGGAAGGCGTTCTTTCACCCCAACACTTGGAGGAGATGGAATTTGCCCATTCTTTGAGACAAAACAAAGTCAACATCAAGATGTGTCAGTACTCCTATGAGCTTCTGCTACAATATTTGCTTAAGACAGAGTGTAAAATCATGCTTGGAATCGTCAATGAAAGGATAAATTTCCAAGTCTCTCCTGGCCAACCATGTGGTCCATATTCGAGTGAAGGAGAAGTCATAACATTAACAGGAAGTAGTCAAGAGGCTGTTGAACAGATAAATCAAAAAGAGATTCGTTGGGGGTACTGGAAGACTCTTTAGAAGAGAGACTTGAGAAGGAAATTTTGGCTGCAGAGGCTGATAAAGCTGAAGCTGAAGCCAAAGAAGGAGATGGAGAAGAGAGCA

Fln Alignment:

Contig4408___MEEDQIEKAVLAYLKKRGFHQTQISLQEEHQ-------KNPSAA---KTDPEVAKLILSFAESENGPVRYREEYSKLRSWTYNSLDLYKHELLRVLYPVFIHCFMDLVAKGHTQEARSFFQSFREDHEALYLHDLQKLEGVLSPQHLEEMEFAHSLRQNKVNIKMCXXXXXXXXXXXLKTECKIMLGIVNERINFQVSPGQPCGPYSSEGEVITLTGSSQEAVEQINQKEIRWG
D7SUX1______________MEEEEIEKAVIAYLKKKGFKQTELAFQEEHHQHQNQQTKNSSSSISSSTDPDIAKHILSFSESENIPARYHEGYSKLRSWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFFNSFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKVSIKICQYSYELLLQYLHKTQSITMLGVINEHINFQVSPGQPAS-ISDDAEVVTLIGSSQDDANQINQKEIHWG

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
352	80			20	0.995493
570		90		10	0.90298
573	90		10		0.90298
574		90		10	0.90298
580	10			90	0.90298
581	10			90	0.90298
583		90	10		0.90298
586		10		90	0.90298
588		10		90	0.90298
589			10	90	0.90298
590	10	90			0.90298
592			10	90	0.90298
805	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain