SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4385

Length: 1346 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene4385

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutathione peroxidase (Fragment) n=20 Tax=Picea sitchensis RepID=E5F5S9_PICSI	-	-	79%
FL-Next	sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	glutathione peroxidase-like protein	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glutathione peroxidase.	EC:1.11.1.9	-	0.0	86%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glutathione metabolism	00480		0.0	86%
Blast2go	Arachidonic acid metabolism	00590		0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	86%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	86%
Blast2go	glutathione peroxidase activity	GO:0004602	Molecular Function	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glutathione peroxidase	IPR000889	-	0.0	-
Sma3		IPR012335	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQB1

Fln msg:

Fln protein: MHFPWGTGRFSSLPRTFPALLMLRTLLYKPHEPSCNPRALYFLASAHTKSFSRPSFWIKPRVLNKDFDHFRVGFSANFAAMTGTSSEQYSSVHDLTVKDIRGNDVDLSIYKGKVLLIVNVASQCGLTTSNYTELNEVYAKYKDQGLEILAFPCNQFGGQEPGDNEQIVEVACTRFKAEFPIFDKVEVNGSSAAPVYKFLKSSKGGIFGKDIKWNFTKFLVDKDGNVVERYAPTTSPLSIEKDVKKLLGMA*

Protein Length: 252

Fln nts: ATGGGGATGTGCAATCCCGATGCTCCCCAGCCAGACCTTTCCTTTAAGTCTTCCACGGGCATTTCCTGCGTTACCTATATCCAGAGCACCCTCATTTAAACCCCCTAAACCTTCCACGACCCCTCACGGTGTCCCTCCTTAAACTCAATCATTCTCACACGCTTCTTTTTTATCAACTCCCATATTCCTATTCAAACCCTGAAACACCATTGTCTTGACCGCCTACCACTC_-_ATGCATTTCCCATGGGGCACCGGCCGTTTCTCGAGTCTTCCACGTACATTTCCTGCGTTACTCATGTTGAGAACACTCCTATATAAACCCCATGAACCCTCCTGTAACCCTCGTGCCCTTTACTTTCTAGCTTCTGCTCATACTAAATCATTCTCACGCCCTTCTTTTTGGATCAAACCAAGAGTACTCAATAAAGATTTTGATCATTTTCGTGTTGGTTTTTCTGCTAATTTCGCAGCCATGACCGGGACCTCATCAGAACAGTATTCCTCGGTCCACGATCTCACAGTCAAGGATATCAGGGGTAATGATGTGGATCTCAGCATTTATAAGGGGAAGGTTTTACTCATTGTCAATGTTGCCTCTCAATGTGGGTTGACTACTTCTAACTATACTGAGCTGAATGAGGTGTATGCAAAGTACAAGGATCAAGGGTTAGAAATACTGGCTTTCCCATGCAATCAGTTTGGTGGACAGGAACCAGGTGACAATGAACAAATTGTAGAAGTAGCCTGCACTCGTTTTAAGGCAGAGTTTCCCATATTTGACAAGGTGGAAGTTAATGGTAGTAGTGCAGCTCCTGTGTACAAGTTCTTGAAGTCCAGCAAAGGTGGGATTTTTGGCAAAGACATAAAGTGGAACTTCACTAAGTTTTTGGTTGACAAAGATGGAAATGTTGTTGAACGATATGCTCCAACGACGTCTCCATTGAGTATTGAGAAAGATGTAAAGAAGTTGTTAGGAATGGCTTGA___TTCTTTCAAGAAACAACATATTATGCCTTTTCTGTTGGTAAATATCAAAGCAGCTGTCATTCAACAAGACTGTTATATTTGCTGCACAAGATTCAAGGGAGTATTGTAAGGGAGTTTGTCAGTTTATCAAAGCACTTATTTTATTTGAGTTGGTCAAGATTCAAAGGAGCATTGTTAGGGAGTTTGTCGGTTGATCAGCCTGTATGTTATGGCATACACTGTGTGTCATGTATTATTTTTAATATGTTTTGTCTACATTGTCATAATGCGGATATATCAATGTAATGTAATTATAACTCTTTGAACGTTTATGGAATGAAAAAAGGGCGCGGATAGGTTTGTTTGCACCAATAAATTTAAAT

Fln Alignment:

Contig4385___SSLPRTFPALLMLRTLLYKPHEPSCNPRALYFLASAHTKSFSRPSFWIKPRVLNKDFDHFRVGFSANFAAMTGTSSEQYSSVHDLTVKDIRGNDVDLSIYKGKVLLIVNVASQCGLTTSNYTELNEVYAKYKDQGLEILAFPCNQFGGQEPGDNEQIVEVACTRFKAEFPIFDKVEVNGSSAAPVYKFLKSSKGGIFGKDIKWNFTKFLVDKDGNVVERYAPTTSPLSIEKDVKKLLGMA
A9NQB1______________SRLPRSFPAVPILQALLYKPLTPSIIPRAFHFRASPSTKISSRFCSWIKPRVPPQDFVIFRVGFSANFTAMTGSSSKQSTSVYDFTVKDIRGNDVDLSIYKGKVLLIVNVASQCGLTNSNYNELNEVYTKYKDQGLEILAFPCNQFGEQEPGDNAQIAEVACTRFKAEFPIFDKVEVNGSNAAPIYKFLKSSKGGLLGNGIKWNFTKFLVDKDGNVVERYAPTTSPLSIEKNVKKLLGIA

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
159	33		66		1.0
263		71	28		1.0
277	71	28			1.0
286			57	42	1.0
349		85	14		0.993533
386		57		42	1.0
476	20			80	0.995493
750	50	50			1.0
776	20			80	0.995493
778			14	85	0.993533
780	85		14		0.993533
809	16		83		0.994512
812		83		16	0.994512
931			25	75	0.996473
945	75		25		0.996473
998	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain