SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4382

Length: 1006 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene4382 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL	-	-	3.00004e-41	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	histone h2b	-	-	0.0	99%

Source	GOs	Term	Type	Identity
Blast2go	nucleosome assembly	GO:0006334	Biological Process	99%
Blast2go	DNA binding	GO:0003677	Molecular Function	99%
Blast2go	nucleolus	GO:0005730	Cellular Component	99%
Blast2go	nucleosome	GO:0000786	Cellular Component	99%

Source	InterPros	Term	Type	Identity
Sma3	Histone-fold	IPR009072	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone H2B	IPR000558	-	-

Full-Lengther Next Prediction

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
360	85			14	0.993533
361		85	14		0.993533
365	14			85	0.993533
368	90	10			0.90298
369	10			90	0.90298
371			10	90	0.90298
372	90		10		0.90298
374		10		90	0.90298
375	10	90			0.90298
376		10	90		0.90298
379	90	10			0.90298
523		88	11		1.0
530	11			88	1.0
531	11			88	1.0
537	12	88			1.0
539			12	88	1.0
540	12	88			1.0
541		12		88	1.0
647			88	11	0.999952
724	90		9		0.999872
726		90	9		0.999872
731	4			85	0.999726
732		9	90		0.999872
734	85		9	4	0.999726
737	9	4		85	0.999726
740	10	80	10		0.99967
742	5	10		85	0.999793
743	10		90		0.999898
744	85	15			1.0
745		10	90		0.999898
748	80	10	5	5	0.99967
749		80	20		1.0
750	5	83			0.999887
751	5	5	11	77	0.999842
754	77	11	5	5	0.999842
756		11	88		0.999937
758		5	16	77	1.0
760		13	6	80	0.999961
763	76			7	0.999983
766	7		14	71	0.999974
767		21	7	71	1.0
768		14	85		0.999981
769	23	7		69	1.0
770	84	15			0.999986
775	18			81	0.999994
777		81	18		0.999994
780	81		18		0.999994
785	10			90	0.90298
786	10	90			0.90298
790		10		90	0.90298
791		10	90		0.90298
793	11			88	0.923564
799		12		87	0.992554
806		12		87	0.992554
807	37	62			1.0
808		25		75	1.0
810		87		12	0.992554
811	12		12	75	0.975346
815		87		12	0.992554
909	61	38			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
350	362	AAAC AAAC AAAC A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain