SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4370

Length: 1477 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene4370 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1118 domain containing protein	-	-	3.0e-40	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	protein	-	-	0.0	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF1118	IPR009500	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ32

Fln msg:

Fln protein: MASAVAGQCGTALISRTGGLLLSSSSSTYSNGGMKLELRVPLPMQGSAMIRAPQLILAMAPKKKVNKYDGNWKKQWFGAGIFLEGDETVDVDIVKKLEKKKVLSGMEKAGLLSKADELGLSLSSIEKMGLLSKAEELGLLSLVEKAVGISPAAMASVSLPLVVAAIATVVLIPDDSAGLLIAQNVLASIFAVSAVGLFGASIVLSGLQE*

Protein Length: 211

Fln nts: TCATCGGGTTCCGATGGATCATTACCCCAATGATACCAGAAGCGGATTGGTTTCTTAAATTTTATCATTTTCTCATTCGTTTGTAAAATTCACATCCCTGTACGTGGGTCCACTCTTCGATCTTATGCTCTGTTTGGCAAAATACGCAGATGCTCACTCCTACCCTCTCCCTTTGCCATCGGCAGTTACGCTGAAATTTGTCTGCCATGTTGAGCAAGTTTTCCACAATTACAACATTTCCAGTATTCAGTGAGATTTTTCGCTGTTTACCTAGTTGTAGGTCTGAATTTCTGCACTCTATCTTTTGTGGGTCTGTTCAAATTATAGGGATATGGATTCTTCTCCTTTGAACTAACGCAATAAACTGTGAGGCTGTAAGCGAATTGAGGACGAATTGTAGAATATAGCGAGGAACGGAACACAATAAAAGGGTTATAAATTATTGTGGCACTCCA_-_ATGGCCAGTGCAGTAGCAGGACAATGTGGTACAGCCCTAATAAGCAGGACAGGGGGATTGCTCTTGTCTTCTTCAAGCTCCACCTATAGCAATGGAGGCATGAAGCTTGAGTTGCGGGTCCCTCTGCCAATGCAAGGTTCAGCTATGATCAGAGCGCCTCAGCTAATTCTAGCCATGGCGCCCAAAAAGAAGGTAAATAAGTACGATGGTAATTGGAAGAAACAGTGGTTTGGTGCCGGGATATTTCTCGAAGGTGATGAAACTGTGGATGTGGATATTGTCAAAAAGTTGGAGAAAAAGAAGGTTCTAAGTGGGATGGAGAAGGCTGGATTGCTCTCAAAGGCTGATGAATTAGGCTTGTCTCTCTCATCTATTGAAAAAATGGGCCTCCTCTCAAAAGCAGAAGAATTGGGCCTTCTAAGCCTTGTAGAGAAAGCGGTCGGCATATCGCCTGCAGCAATGGCATCTGTGTCACTGCCATTAGTTGTGGCCGCTATTGCCACTGTTGTACTCATTCCAGATGATTCCGCTGGGCTGTTAATTGCTCAGAATGTTCTGGCATCCATTTTTGCAGTCAGTGCAGTTGGTCTGTTTGGCGCTTCTATTGTTCTGAGCGGTTTACAAGAGTAG___GAATGAAATTATTTATACACATTTCAATGTCTACTGTTTTCCATTGGATCTACTCAGTCACACTGCCATATAATTGGGTCTTGTATGTGTATGTGGGTTCATGCTTGTAATTCATGTTTAATTGTTTTAGGACTTCGTTTGAGTACAGGAGTTAGTTTCTGTGCATTCATTCCAATTTGGTGAATTGCTCCTGTGGTTTATGTAAATTATTCGTTATCTTTTTCCATATGATCTCTATTACTTTCGTTATGTCAACACAGTGAGGTTTTTCATCTTAGTAACAACGATAGACCCATATTTACATTCTGCTTTTAGGCCTTCGGTGTATGCTCTTTTAACACCTCCATTTTCCTTTGTCAGATGGTTTTCTTGTTCTTATTTTAAGTGTGTTT

Fln Alignment:

Contig4370___MASAVAGQCGTAXXXXXXXXXXXXXXXXXXXXGMKLELRVPLPMQGSAMIRAPQLILAMAPKKKVNKYDGNWKKQWFGAGIFLEGDETVDVDIVKKLEKKKVLSGMEKAGLLSKADELGLSLSSIEKMGLLSKAEELGLLSLVEKAVGISPAAMASVSXXXXXXXXXXXXXXPDDSAGLLIAQNVLASIFAVSAVGLFGASIVLSGLQE
A9NZ32______________MASAVAGQCDSTLISRRGGLLLSSSSSTYNNGGMKLDLRVPLPMQGSAMVRAPLLILAMAPKKKVNKYDDNWKKQWFGAGIFLEGDEDVDVDIIKKLEKRKVLSGVEKAGLLSKADELGLSLSSIEKMGLLSKAEDLGLLSLAEKVASISPAAMASVSLPLVVAAIATIVLIPDDSAGLLIAQNFLAAIFAVSAVGLFGASIVLSGLQE

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
167	14			85	0.993533
232		88		11	0.923564
244		88		11	0.923564
266	90		10		0.90298
646		7		92	1.0
647		92		2	0.987114
1246	6		93		0.999453
1304	86	13			1.0
1305	91	8			0.999807
1318		11	88		0.999937
1319		12	87		0.999964
1320	86	13			0.999973
1321	13		86		0.999973
1334		18		81	0.999994
1337	14			85	0.993533
1369	83	16			0.994512
1374		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain