SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4358

Length: 1248 nt

Origin of reads: Biogeco1 v2 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene4358 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	reticulon-like protein B22 [Arabidopsis thaliana] sp\|Q8GWH5.1\|RTNLT_ARATH RecName: Full=Reticulon-like protein B22; Short=AtRTNLB22 dbj\|BAC43428.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63877.1\| unknown protein [Arabidopsis thaliana] gb\|AEE36170.1\|	-	-	7.0e-37	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	reticulon-like protein b22	-	-	0.0	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Reticulon	IPR003388	-	0.0	-
Sma3	Tubulin, conserved site	IPR017975	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC08

Fln msg:

Fln protein: MELKMTVLRKPGMPLVILICGSLVYYHCAICNASMVSLLCDVLIVLLCSFAVLGMLFRQMNVSVPVDPLEWQISQETANKIAACMANTIGAAESVLRVAASGHDKKLFLKVVFVLYLLSALGRVASGATVAYAALWFVSLIFCTSNLSPESARQSQFLNKKRDGTKVGGQES*

Protein Length: 174

Fln nts: ATGGGGAAGGATCTCTTTGATAGGTTAACCCTCTGGGAATCCAGCATCGCCTCCCTCATATCTTAATTATACGGTGCCACAAATTATTGAAGCATCCAAAGCCGGTGGTGTGGCACTCTGCAAAAGGCCAGCATGGAAGTGTGTAGAATAATTGAGCAGATATTCCTTCTCCAGATAGCCAAGATAATATTTAAAGACGGTAGACCTTAGTACGCAATACTACCCACATCCAAACAATTGAGCAATTAGAAGAAAAGTTTTAGATTGATTCATAGAGATCGTGTGCAA_-_ATGGAATTAAAAATGACAGTGCTGAGGAAACCAGGAATGCCTCTGGTCATTTTGATATGCGGAAGCCTTGTATATTATCACTGTGCAATATGCAATGCAAGTATGGTGTCTCTCCTCTGCGATGTTCTCATAGTCCTCCTGTGCTCCTTTGCAGTGTTGGGGATGCTTTTCCGCCAGATGAATGTCTCTGTACCTGTGGATCCGTTAGAATGGCAAATTTCACAGGAAACTGCAAATAAAATTGCTGCATGCATGGCCAACACTATTGGTGCTGCAGAATCTGTTCTCAGAGTAGCTGCAAGTGGTCATGACAAGAAACTCTTTCTCAAGGTAGTTTTTGTTCTGTATCTTTTGTCTGCGCTAGGAAGAGTGGCATCGGGTGCTACAGTTGCATATGCAGCTTTATGGTTTGTTTCATTGATCTTCTGCACTTCAAATTTGTCACCTGAATCAGCGCGTCAGTCTCAATTTCTCAACAAGAAAAGAGATGGAACAAAGGTTGGAGGGCAAGAAAGTTGA___ACATGATGAATTGGGTCTACGCATACAATAACGGTCACCAACTCATTTTTTTGAAACAGCATGAAACCCTACATTGATAGTGGGGATGTACATCCATTTAGAAATTTATCACAGCCTTTCAGTTAGAAGCCAAGTCAGGTTTAGAACATCTGTGCTATCCTGCTCTTCTGATCAATGTACTTAAGATGATTGTCAGATTAGCTGATTCTTAAATTGGACTAGTATGTGGAGTTTATATGTTCAGTGCAACAAGCCTGGCTTGAAATTGTTTTAGTTGGTAGTTGGGGAGAGTCAACTGTCATCCATAAGATGTATGTAAAATTCACAAGGAAAAATATCTCATTTGAGGATTATTTGGCTAGCAGATTCGTTGTAAACTTGATGATTTTGTAACAAACCTGTCTGCAGTCTGATGGCAGTTGTATAAGAGGAGCAAAAGGT

Fln Alignment:

Contig4358___MELKMTVLRKPGMPLVILICGSLVYYHCAICNASMVSLLCDVLIVLLCSFAVLGMLFRQMNVSVPVDPLEWQISQETANKIAACMANTIGAAESVLRVAASGHDXXXXXXXXXXXXXLSALGRVASGATVAYAALWFVSLIFCTSNLSPESARQSQFLNKKRDGTKVGGQES
D5AC08______________MEFKMTVLRKPGMPLVLLICGSLVYYHCAICNSSMVSLLCDVLIVLLCSFAVLGMLFRQMNVSVPVDPLEWQISQETANKIAACMANTIGATESVLRVAASGHDKKLFLKVVVVLYFLSALGRVASGATVAYAALWFVSLIFCTSNLSPESTCQSQFLNKKRDGTRVGGQES

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
720		20		80	0.995493
729	20			40	1.0
732	80			20	0.995493
762		25		75	0.996473
1010	50		50		1.0
1036	50	50			1.0
1037		50	50		1.0
1038		50		50	1.0
1039	50	50			1.0
1040	50			50	1.0
1043		50		50	1.0
1200		25	75		0.996473
1201	75	25			0.996473
1202		25	75		0.996473
1203		25	75		0.996473
1204	25		75		0.996473
1205	75			25	0.996473
1207		33	66		0.997452
1209		33	66		0.997452
1214	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain