SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4334

Length: 1660 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene4334

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nucleoprotein TPR [Arabidopsis thaliana] sp\|A4GSN8.1\|NUA_ARATH RecName: Full=Nuclear-pore anchor; AltName: Full=Protein TRANSLOCATED PROMOTER REGION; Short=AtTPR gb\|ABO21684.1\| nuclear-pore anchor [Arabidopsis thaliana] gb\|AEE36226.1\| nucleoprotein TPR [A	-	-	5.99994e-41	49%
FL-Next	sp=Nuclear-pore anchor; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	49%
Blast2go	nucleoprotein tpr	-	-	0.0	68%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	68%
Blast2go	negative regulation of protein sumoylation	GO:0033234	Biological Process	68%
Blast2go	stamen development	GO:0048443	Biological Process	68%
Blast2go	poly(A)+ mRNA export from nucleus	GO:0016973	Biological Process	68%
Blast2go	protein binding	GO:0005515	Molecular Function	68%
Blast2go	cytosol	GO:0005829	Cellular Component	68%
Blast2go	nucleolus	GO:0005730	Cellular Component	68%
Blast2go	nuclear envelope	GO:0005635	Cellular Component	68%
Blast2go	chloroplast	GO:0009507	Cellular Component	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Tetratricopeptide, MLP1/MLP2-like	IPR012929	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: A4GSN8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 399 aas, your sequence is shorter than subject: 205 - 2093

Fln protein: ASLQSSRIDAEKKYKEVDEQNKLLLDRLEAMHIKIAEKERNEMGTTVRGQSVDDQGESDFQNVIRYLRRSKETADTEISLLKQERMRLQKQLESALRASDIAQAALRKERENMRSAIYTDEEFSSLQCQVAEINLLRESNAQLRDENKRNFEECQELRDRLQNVQLDTEELRKSVREKDIELDAAQKRAGNAENGDKALGKQSL*

Protein Length: 206

Fln nts: AGCATCCTTGCAGTCTTCAAGGATTGATGCTGAGAAGAAATACAAAGAAGTTGACGAGCAGAATAAGCTCTTACTTGACCGTCTGGAGGCCATGCATATCAAGATAGCAGAGAAAGAAAGAAATGAAATGGGAACCACTGTACGTGGGCAGAGTGTCGATGACCAAGGTGAAAGTGATTTTCAAAATGTTATTCGTTATTTACGACGCTCGAAGGAAACAGCTGACACAGAAATTTCATTATTAAAGCAAGAGCGTATGCGGCTTCAGAAACAGCTTGAAAGTGCTCTTCGGGCGTCTGATATAGCACAAGCTGCATTACGCAAGGAACGGGAAAATATGCGGTCTGCTATTTATACAGATGAAGAGTTCAGTTCTCTGCAGTGCCAGGTAGCAGAAATAAACTTGTTAAGAGAAAGTAATGCACAGCTTAGAGATGAAAATAAGAGAAATTTTGAGGAATGCCAGGAATTGCGTGATAGACTTCAAAATGTACAGTTAGACACTGAAGAGCTACGTAAGTCTGTGAGAGAGAAGGACATTGAGTTGGATGCAGCTCAAAAAAGAGCTGGAAATGCAGAAAATGGAGACAAGGCGTTGGGAAAACAGAGTCTCTAAGTTGTTGGAGAAGCACAAGACAATTGATGTGGAGCACTACGAACATATCAAGGTCGAGCTGCAACAACTTCAGGAGAAATCGGAAGCTATGACCACAGAAGTGGATATGGGGAGAAAATTGATAGCAGAAAAGCAAAAAAGAATATCAAATTTGGAGGAAGAGGTTGTCTCTACAGAGGTCAAGTTGTCTGAAATGGAAAAGAAGCTTCAAGAAATTTCCCAGGTTGAGGCAACTCTTAAATCTGAAGCTGACAAGCATAAGAAGCATTCAATTTTACAGAAGAGAAGAGCTGACTCTTTGACTAAAGAGAAAGATGAGTTAAACAAGGAGAAACAGGCTTTGGTCAAACAGATTGAAGAAATGAGATCAAGCAAAAAAGGTAGTGGAGCTCTCAAAGCAACAGGAGTCTATTATTCGTCAGGAGATGACAGCCCAGCATGAACAGGCTCTGAAGGATTCTGAAAACATGTTAAAGGAAAGAGATACAAGGATACAGATTTTAGAGAAGACACTCGAGAGAGAAAGGGAGGAATTGCGAAAGGAAAAATTGAAGCGGCAAAAAGATCAGAAGAGTTTTGTGGAAGTTGCTAAAAGGGCTGTCCAGGAAAAAAGAGGTACTATGATGAATATGGAAGAATTAAATCTCTGCAAGGACATAGCATAGAGAAAAGTGGTTCAAGCTCTTGCGAGATTACGGCTTTAGATGAAAAGGCTGTGAGTTATTTTACTGCAGTGGATCATCTTGAAGAAATATCAAACTTAGTGGCCACAGATACTACAATTCGTTCTAGCACTATGGATGTTCCACCTTCATTTGAGTTATCTACTGGGGCAGGGGACGTTTTGCCTTGCATTCCTTCTACTTCAGGGAGTACACTGAATGCAGTTTCTATACCTTCTGGGAAAGTGAACCAAACTACTGGTAGTACATCTGCAATTAGTTCAGTAGCTGTCTCTAGTGCTGCACCAGTCACAACAACTACTATAACTGCTGCTCGACAGATACATCGGCAAGCATTAAGTACAAATCCCACATCTCAACA

Fln Alignment:

Contig4334___LQSSRIDAEKKYKEVDEQNKLLLDRLEAMHIKIAEKERNEMGTTVRGQSVDDQGE-SDFQNVIRYLRRSKETADTEISLLKQERMRLQKQLESALRASDIAQAALRKERENMRSAIYTDEEFSSLQCQVAEINLLRESNAQLRDENKRNFEECQELRDRLQNVQLDTEELRKSVREKDIELDAAQK
A4GSN8______________LEQQKNLAEKKYHELNEQNKLLHSRLEAKHLNSAEKN-SRSGTISSGSTDSDHLEDSGLQRVVHYLRRTKEIAETEISLMRQEKLRLQSQLESALKMAESARGSLTAERASTRASLLTDDGIKSLQLQVSEMNLLRESNMQLREENKHNFEKCQEMREVAQKARMESENFENLLKTKQTELDLCMK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
713	66		33		0.997452
755	75			25	0.996473
756	75		25		0.996473
758	66		33		0.997452
839		50	50		1.0
1202	20			80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
111	123	AGAA AGAA AGAA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain