SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4324

Length: 1460 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene4324 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Multidrug resistance-associated protein 2, 6 (Mrp2, 6), abc-transoprter, putative n=1 Tax=Ricinus communis RepID=B9SAP4_RICCO	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	multidrug resistance protein abc transporter family	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	stomatal movement	GO:0010118	Biological Process	76%
Blast2go	response to water deprivation	GO:0009414	Biological Process	76%
Blast2go	drug transmembrane transport	GO:0006855	Biological Process	76%
Blast2go	response to wounding	GO:0009611	Biological Process	76%
Blast2go	folic acid transport	GO:0015884	Biological Process	76%
Blast2go	metabolic process	GO:0008152	Biological Process	76%
Blast2go	response to nematode	GO:0009624	Biological Process	76%
Blast2go	folic acid transporter activity	GO:0008517	Molecular Function	76%
Blast2go	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	76%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	76%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	76%
Blast2go	plant-type vacuole	GO:0000325	Cellular Component	76%
Blast2go	plastid	GO:0009536	Cellular Component	76%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p	IPR001678	-	-
Sma3	Proteinase inhibitor I3, Kunitz legume	IPR002160	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSU0

Fln msg: Distance to subject end: 23 aas, your sequence is longer than subject: 259 - 131

Fln protein: MVAVERILQYCRIPSEAPLVLQNKHPEIEKGWPIQGSISVEHLQLRYLPNAPLVLKDVTFSVNGGEKLGVVGRTGSGKSSLVLALFRIVEAAAGKIIIDGIDISMVGLNVLRLKLSIIPQEPALFEGTIRHNLDPLCVHTDQEIWESLERCLLADVISQKEEKLDTLVSEKGENFSMGQRQLICLGRVLLRRSRILILDEATASVDTQTDLLLQNTIKTEFADCTVISIAHRIPTVMGCDKVVVLDEGQVKEFGSPTLL

Protein Length: 260

Fln nts: TGCGATCTCTATTGATTTCTATTTCTGGACTGAGGACAGCACAAGAATTTTATCAAAATATGTTGGACAGTATCTTTCGGGCTCCCATGTCTTTCTTTGACACTACACCCACTGGAAGGATTCTTACAAGGTCGTCTACAGATCAGCAGAAGTTGGACTTTGATATTCCATTGATTTATGGCTCAAGCTTGGCAGTTGGTTTCCAGCTTATTGGAGTACTTTTTGTTACATGCAAAGTAACATGGCAGATGTTATTTGTCATCATTCCCCTGGGATGGGTTTATGTAGCATATCTGAAGTATTTTCTTAACACATCAAGGGAACTGACTCGTTTGGGTTCGATTGCAATGGCACCTATTATTCACAATTTCTCCGAAACACTTTCTGGAATTACAACAATTCGAGCTTTTTGCCACCAAGAAAGGTTCAAATCTACTAATGCTAGGCTGGTCAACACAAATATATCTATCGAATTTCATAATATTGCTGCCAATGAATGGTTTGGCTTCCGTATTGAGAGTATTGGTACCATGATACTTTTGCTCATCTGCATTACTGTTGGTTTTCCTCCCAAAAAGCATCATACAACCTGAATCTGTGGGGCTTTCCCTCTCATATAGTCTTGCACTCAATGGTTGCCTTTTATCCCTAGTGTACTGCATCTGTTATATTGAACAAAGC_-_ATGGTAGCAGTAGAAAGAATATTGCAGTATTGTAGGATTCCAAGTGAAGCTCCACTCGTACTGCAAAATAAGCACCCTGAAATTGAAAAGGGTTGGCCAATCCAAGGAAGCATTTCTGTGGAACATTTGCAGTTAAGATACCTCCCAAATGCACCACTTGTATTGAAGGATGTTACATTCTCTGTTAATGGAGGGGAAAAACTTGGAGTAGTGGGAAGGACGGGCAGTGGAAAATCTTCTCTTGTCTTGGCTCTTTTTCGAATAGTTGAGGCTGCTGCAGGAAAAATAATCATTGATGGGATCGATATTAGTATGGTTGGCCTAAATGTATTGCGGTTGAAGCTCAGCATCATTCCTCAAGAACCGGCTCTATTTGAAGGAACAATCAGACATAACTTAGATCCACTATGTGTGCACACAGATCAAGAGATATGGGAGTCATTGGAGAGATGCTTGCTAGCTGATGTGATTTCTCAAAAGGAAGAAAAGCTGGATACTCTTGTTTCTGAAAAGGGAGAGAACTTTAGTATGGGACAAAGGCAACTTATTTGTCTTGGTCGGGTTCTTTTAAGAAGGAGTCGTATCCTCATTCTTGATGAGGCAACTGCATCAGTTGATACTCAAACAGATTTATTGTTGCAGAATACAATCAAGACTGAGTTTGCAGACTGTACAGTTATAAGTATTGCACATAGAATACCAACCGTAATGGGCTGTGACAAAGTTGTTGTCTTGGATGAAGGGCAAGTAAAGGAGTTTGGATCACCTACATTGCTGCT

Fln Alignment:

Contig4324___ISQKEEKLDTLVSEKGENFSMGQRQLICXXXXXXXXXXXXXLDEATASVDTQTDLLLQNTIKTEFADCTVISIAHRIPTVMGCDKVVVLDEGQVKEFGSPTLL
A9NSU0______________IEDLPNQLDSSVSDEGENWSAGQRQLLCLGRVLLRRNRILVLDEATASIDSATDALLQKVIRHEFSNCTVITIAHRVPTVIDSDMVLTLSDGKLAEYDNPAKL

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1301	75		25		1.0
1325	62		37		1.0
1328	37	62			1.0
1354	28		71		1.0
1355	28			71	1.0
1356	14		85		0.993533
1390			33	66	1.0
1391	66		33		1.0
1404			33	66	1.0
1406	33			66	1.0
1416		20		80	0.995493
1421		20		80	0.995493
1457		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain