SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4308

Length: 1619 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene4308 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7SLJ7_VITVI	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	protein	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	80%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3		IPR012287	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	SANT/Myb domain	IPR001005	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNN4

Fln msg: your sequence is longer than subject: 443 - 390

Fln protein: MGRTPCCLKVGLNRGPWTPEEDLSLANYIQAHGEGGWRTLPKKAGLLRCGKSCRLRWMNYLRPDVKHGHILPEEEDLILRLHRLLGNRWSLIAGRMPGRTDNEVKNYWNTHLSKKLISQGIDPRTHKPLSESEDICSSPGNSEVSRKSQRENNAEIPRKVADGAVDIQDKEEEITEDQTSAQLPENQLLETSNSQCLSVATDFVPQAPSIPSTAYSFQQSTTSSVPGGVSDSVDVNHNKGSKQVPFPLSNTACFNSSAQGVAGDYLDQYLMKNLVTNSNDLITSTVRLSSALQTAPFVAQFDSNRVFISGNASLNEKHQMSQNSQALEMDPHHSFVAHPSEEGTYDKLSHTRCAASDQVTSFNYPYLLSHPATGSALGDFNSDIFPSFVESFTNEQLQVQEPSIHASMAENVQLCPSSQPKAENLPSYDLWSILSPSTQFHP*

Protein Length: 444

Fln nts: TATTGGGTATCCTCCGCTCGCATATTGCAAGGGCGACCCTGGCGTTTTTCTCGAGTTAAGACCCGATTGTTGGATTGGCAGTTATTCTATTGCTTTTCGTGCAGATCGGGACTGCAAACAGAACCATAGTTCTGCAACATTCA_-_ATGGGACGGACTCCTTGTTGTCTGAAAGTGGGACTCAATCGAGGTCCCTGGACACCCGAGGAGGATCTTAGCCTCGCAAATTACATCCAAGCTCACGGAGAAGGCGGGTGGAGAACACTTCCAAAGAAAGCAGGTCTGCTCCGATGCGGGAAAAGTTGCAGATTGCGTTGGATGAATTATCTCCGACCTGATGTGAAACACGGGCACATATTACCCGAGGAGGAAGATTTAATACTCAGGTTGCATCGGCTTCTTGGAAACAGGTGGTCTTTGATCGCTGGACGTATGCCTGGCAGAACGGATAATGAGGTCAAGAACTATTGGAATACCCACCTCAGCAAAAAGCTTATCAGTCAGGGTATCGACCCGCGGACGCACAAACCCTTGTCAGAATCCGAAGACATATGTTCGAGTCCCGGGAATAGCGAAGTGAGCCGCAAGTCTCAACGGGAAAATAACGCTGAAATACCAAGAAAAGTTGCCGATGGCGCGGTTGATATTCAAGATAAGGAAGAAGAAATCACAGAAGATCAGACATCTGCTCAATTGCCTGAGAATCAGCTTCTTGAAACAAGCAATTCTCAGTGCCTGTCTGTCGCTACTGATTTCGTGCCTCAGGCTCCCTCGATACCTTCCACGGCTTATTCATTTCAACAGAGCACAACTTCAAGTGTTCCCGGAGGCGTGTCGGATTCAGTTGATGTTAATCATAATAAGGGAAGTAAGCAAGTTCCTTTTCCTCTCTCAAACACTGCATGTTTTAATAGTTCGGCACAAGGGGTAGCTGGTGACTATCTCGACCAATATTTGATGAAGAATCTTGTTACTAACAGCAATGATCTGATAACATCCACTGTGAGATTAAGCTCCGCTTTACAAACTGCACCTTTTGTGGCACAATTCGATTCAAATCGTGTTTTTATATCAGGCAATGCATCGCTCAATGAAAAACATCAGATGTCTCAGAACTCACAAGCTTTGGAAATGGATCCCCACCATTCTTTCGTAGCGCATCCTTCTGAGGAGGGTACCTATGATAAATTGAGCCATACAAGGTGTGCAGCTTCTGATCAGGTCACATCATTCAATTATCCATATCTTCTTTCTCATCCTGCTACGGGCTCAGCCCTTGGGGATTTTAATTCGGATATCTTTCCTTCTTTTGTGGAATCTTTTACTAATGAGCAGTTGCAGGTCCAAGAACCTAGTATACATGCGTCTATGGCAGAGAATGTACAGCTATGTCCATCAAGTCAGCCTAAAGCTGAGAACCTTCCTAGTTATGACTTGTGGTCCATCCTCTCTCCAAGCACACAATTCCATCCCTAA___GTAAAGGAGCCCTCAGTATTATATATTTGCGTGATATCGTGATGTGTATAACAGTCTGTGTTATTGGATTATTCTTTTCTGGCATTTGATATGATGTGTGCACTAAGAAATTAATGTGAAGATTGTCTGAATACCCGTTGTAGAAGA

Fln Alignment:

Contig4308___MNYLRPDVKHGHILPEEEDLILRLHRLLGNRWSLIAGRMPGRTDNEVKNYWNTHLSKKLISQGIDPRTHKPLSESEDICSSPGNSEVSRKSQRENNAEIPRKVADGAVDIQD----KEEEITEDQTSAQLPENQLLETSNSQCLSVATDFVPQAPSIPSTAYSFQQ-XXXXXXXXXXXXXXXVNHNKGSKQVPFPLSNTACFNSSAQ-GVAGDYLDQYLMKNLVTNSNDLITSTVRLSSALQTAPFVAQFDSNRVFISGNASLNEKHQMSQNSQALEMDPHHSFVAHPSEEGTYDKLSHTRCAASDQVTSFNYPYLLSHPATGSALGDFNSDIFPSFVESFTNEQLQVQEPSIHASMAENVQLCPSSQPKAENLPSYDLWSILSPSTQFHP
B8LNN4______________MNYLRPDVKHGHILPEEEDLILRLHRLLGNRWSLIAGRMPGRTDNEVKNYWNTHLSKKLISQGIDPRTHKPLSESEDICSSPGNSELSHKSQKENNAEIPRNFADGTADFQDAVASKGGAIAEDQTSGKSPANQLLESSPSQPASVAVDFVSRPPSISSSPHSFQQSITSTCVPGGVSDSVDINHNKGCKQISFPLLNTACFNSSAQEEVARDYLDQYLMKNPVTNSNDMITSTVRLSSALQNAPFVGQFDSSHAFMSGNALLNEKRQMSQSAQALEMEPHPSLV-HPSEEGTYNKLSHTTCAVSDQITAFNYQYLISPTATGAALVDFNSDIFPSFVEPFINEELQLQEPSVQTSIAQNIELCPSSQPKAVNLSNYDLWSMLSPSSQYRP

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
510		12		87	0.992554
572	16			83	0.994512
575	83			16	0.994512
576	83			16	0.994512
781	75			25	0.996473
841	25		75		0.996473
843		25	75		0.996473
844			75	25	0.996473
845	75	25			0.996473
847		25	75		0.996473
848		25	75		0.996473
849		25		75	0.996473
850	75		25		0.996473
851	50			50	1.0
852		66	33		0.997452
855	33		66		0.997452
857	33		66		0.997452
860	33	33	33		0.997753
861	33	66			0.997452
864		33	66		0.997452
866		33	66		0.997452
1302	16			83	0.994512
1303	83	16			0.994512
1331		80	20		0.995493
1419		16		83	0.994512
1549	66		33		0.997452
1596	33			33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain