SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4302

Length: 1045 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene4302 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF868 domain containing protein	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	protein	-	-	70%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Ribosomal protein L24e-related	IPR000988	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Protein of unknown function DUF868, plant	IPR008586	-	-
Sma3	TRASH	IPR011017	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNS3

Fln msg: Distance to subject end: 23 aas,

Fln protein: MHRMVVSCFADYTDMRTKQNLITCLYQIKLAGSSKLVTVTWSRSLISQDFSVHFNDQESHCMCKVEMKPWFFCNRKGSKSFNVKGNEVFVFWDLSKAQYICGPEPHGGFYVALVCDGDLVLLLGDLKQEALKKTKARSLAMEPALLSRREHAFGKKYYATKAQFGEHGKTHDIVIECHTGGGTNQTKEPRLDVRVDKQVVLQVKHLVWKFRGNETIQIDGLPIEVFWDVHNWLFNPSTGHAVFMFQSSMNGRVSCPPAVLQWPNALT

Protein Length: 268

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAAATTTTTGTGAACATGGAGAGAGTATGAACAGTCACATTAAATGCCCCAGGACAGGAAGCCTTGCAGAACAGACAGGCAGGAGGGGCCAGTAAAGCACATGGGTTGAAGAAATAGGGATAGCAAGTTGTGGTCCTAGAGGGTGAGGACGAAAAGCGCTTGCCCATATTCTGGTTTTGTTGAGATGGATGCATTTTATTCCCAGCATCTGTAGTAA_-_ATGCATCGGATGGTTGTTTCATGCTTCGCAGATTACACAGATATGAGGACAAAACAGAACTTGATCACTTGCCTGTATCAGATAAAGCTCGCAGGCTCATCCAAGCTTGTGACTGTAACATGGTCCAGAAGTCTGATAAGCCAGGACTTTAGTGTACATTTCAATGACCAAGAGAGCCATTGCATGTGTAAAGTTGAAATGAAGCCCTGGTTCTTCTGTAACAGGAAAGGATCCAAGAGCTTCAATGTGAAAGGAAATGAGGTCTTTGTGTTTTGGGATCTCAGCAAAGCTCAATACATCTGTGGCCCAGAGCCGCATGGGGGCTTCTATGTGGCCCTGGTCTGTGATGGGGATCTTGTTTTATTGCTTGGGGACTTGAAGCAAGAAGCCCTAAAGAAGACCAAAGCCAGATCGCTGGCCATGGAGCCTGCATTGTTGTCTAGGAGAGAACATGCATTTGGTAAGAAGTATTATGCAACAAAAGCCCAGTTTGGAGAACATGGGAAGACTCATGACATCGTTATAGAATGTCATACAGGAGGAGGGACTAACCAAACTAAGGAGCCAAGGTTGGATGTGAGAGTTGATAAGCAAGTTGTGCTGCAAGTTAAGCATCTGGTGTGGAAGTTTAGAGGGAATGAGACTATACAGATTGATGGGCTTCCTATTGAAGTGTTTTGGGATGTCCATAACTGGCTTTTTAATCCAAGCACAGGTCATGCAGTCTTCATGTTTCAGTCCTCAATGAATGGCAGGGTGTCATGCCCTCCTGCTGTTTTACAGTGGCCTAATGCACTGACATT

Fln Alignment:

Contig4302___QNLITCLYQIKLAGSSKLVTVTWSRSLISQDFSVHFNDQESHCMCKVEMKPWFFCNRKGSKSFNVKGNEVFVFWDLSKAQYICGPEPHGGFYVAXXXXXXXXXXXXXLKQEALKKTKARSLAMEPALLSRREHAFGKKYYATKAQFGEHGKTHDIVIECHTGGGTNQTKEPRLDVRVDKQVVLQVKHLVWKFRGNETIQIDGLPIEVFWDVHNWLFNPSTGHAVFMFQSSMNGRVSCP
B8LNS3______________QNMVTCLYLTTLSGQTRLITVTWCKNLMGQGLSVNVDDPSYQCLCRVDMKSWLFWKKKGSKRFELGTTKVDVFWDLSSARYGSAPEPLEGYFVAVVSNEEVALLLGDMCKEAFKKTHAKPPA-ETVLISRKEHVFGKNCYTTKAQFCNSGRIHDIVIECQTGG----PREPKLCVRIDKQLVVQVKHLIWKFRGNQTISVDGLPIEMFWDVHDWLFNPSLGHAVFMFKTITSGEVQEP

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
626		12	87		0.992554
689		87		12	0.992554
748		16		83	0.994512
775		33	66		1.0
777		33	66		1.0
778	83	16			0.994512
779	83			16	0.994512
780			83	16	0.994512
781		80		20	0.995493
818		33	66		0.997452
819		33	66		0.997452
820		33	66		0.997452
842	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain