SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4274

Length: 1133 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene4274

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative zinc finger protein [Oryza sativa Japonica Group]	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	e3 ubiquitin-protein ligase ring1a-like	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	0.0	67%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Ribosomal L11 methyltransferase, PrmA	IPR010456	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABG3

Fln msg: Distance to subject end: 129 aas, your sequence is shorter than subject: 303 - 475

Fln protein: MPAQKRSASPPADREDDDSEDSLSNSSDKDEYVVVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPQCRTHCASRRSLRDDPNYDALIAAIYPDLDKYEEEELALHEEDKWLNKQIQANIAQTYRRQSEALTRRRNTAKVTAAAIVRKAHGKFRNGQAGSKSGRKRQKRSVSTDVDEHTALKHSSSDEDSQEIRHQSEKIIPSSLPETSANTDNSNDDSDEINHGQAEVSRESTGGSHQIKGNIEVLVWGKGGARNQYAIWKCKWLKQQECLACVLLRWSIIFCLK

Protein Length: 304

Fln nts: ATGGGGGAATAGGAACTGAGCGTCAAAACGCATGCGCCGGCGAGAGGCTTCGTGAGCTTGGCTGTCACTCATCTCTCCCTTCTTCGGTTTCAATCCCTCGTTCTCGCCTCCACCACCTTGAATTATCTGGTTCAGTGAATTCCTCATATTCTCACAGCGTCTCAGAGGGGCTTTTCGTTCCCATTTCAGCGAAGAGGGCCATTGGGCCGAGGTTCGAAACACA_-_ATGCCAGCTCAAAAACGCTCGGCATCTCCTCCCGCGGACAGAGAAGACGACGATTCAGAAGACAGTCTTTCTAACAGCAGCGATAAAGACGAGTATGTTGTGGTCAAACTGTCTGATATTCGTAAGGAAGTGCAGTGTCCTATCTGCCTGGGAATTATCCGAAAGACAAGGACGGTGATGGAATGTCTCCACCGCTTTTGCAGAGAATGTATTGACAAGTCAATGCGTTTAGGGAACAATGAATGCCCTCAATGTCGTACACACTGTGCCAGCCGCAGATCGTTGAGAGATGATCCAAATTATGATGCTCTGATTGCAGCAATTTATCCCGACCTTGATAAGTATGAAGAAGAGGAGTTGGCTTTGCATGAAGAAGACAAATGGCTCAACAAGCAGATCCAGGCAAATATTGCACAAACATATCGGCGACAATCAGAAGCTCTTACCAGGCGCCGTAACACTGCTAAGGTCACTGCAGCAGCCATTGTTAGAAAGGCACATGGAAAATTTCGAAATGGTCAGGCTGGAAGCAAAAGTGGAAGGAAACGACAAAAGAGAAGTGTGTCTACTGATGTTGATGAACACACTGCACTGAAGCATTCTTCTTCTGATGAAGATTCTCAAGAAATTAGGCATCAAAGTGAAAAAATAATACCAAGTTCTTTACCTGAAACTTCAGCAAACACAGATAATAGCAATGATGACTCTGATGAAATAAATCATGGCCAAGCAGAAGTGAGCAGAGAAAGCACTGGTGGCTCTCATCAAATAAAGGGAAACATAGAAGTATTGGTTTGGGGTAAGGGTGGTGCACGGAACCAATATGCGATATGGAAGTGTAAGTGGCTCAAACaGCAAGAATGCCTGGCATGCGTGTTGCTAAGATGGTCAATTATCTTTTGTCTAAAGC

Fln Alignment:

Contig4274___EYVVVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPQCRTHCASRRSLRDDPNYDALIAAIYPDLDKYXXXXXXXXXXDKWLNKQIQANIAQTYRRQSEALTRRRNTAKVTAAAIVRKAHGKFRNGQAGS------KSGRKRQKRSVSTDVDEHTALKHSSSDEDSQEIRH--QSEKIIPSSLPEXXXXXXXXXXXXXE-------------INHGQAEVSRESTGGSHQIKGNIEVLVWGKGGARN--QYAIWKCKWLKQQEC
D5ABG3______________EYVLVNLAAIREEMQCPICLGIIRKTRTVMECLHRFCRDCIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAAIYPDLDKYEAEEMALHEEEEDRNRQIQASIADTFRRQSEAMTRRRRTAKATAAAFVRKAHGKFCGVQGQSRVNNRVKNRSKRPRRSSATDGDEGEDLKQSFSDDEEPQPRRWTRRKRRAGSSLPETSADMDVGNGEEPDDINDEEAGENIQLVEYNQAEVSRESTDASPGNARNAEGLAWGKGGARSHMKYASVRGTHVKNNRC

SNPs (tot: 4)

Position	A %	G %	T %	Probability
773	75	25		0.996473
874	75		25	0.996473
875	75	25		0.996473
876	75		25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain