SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4272

Length: 537 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene4272
GTACTGAAAGTAATATAAACCAAGAAACAAGTGAAAAATATCTAGAAGTAGACAATTTAGGTGCAAGATCTCGACAAGCTGAAACAGTTGCTACTGATGAAAAGCATGACATGACCGCACCATCTGGAAAGGTTGGGCGTGGTCGACATGGAAAGTTAAAGAAGATCAAGGAAAAGTATGCAGAACAAGATGAGGAGGAGAGACAACTTCGTATGGCATTGCTAGCTTCTGCAGGAAAAGGTTCCAAAAATATTGAATCAAAGCGAGAGAAGGAAGTTGTGGCTACTGCAAAAGGTGCTATACAAACAGGTGAAGCTGATATTACAAAAATATGCTATAAATGCAAGAAAGCAGGCCATGTTGCACGAGACTGTCCAGAGTCAATTGAAGACAGAAATGAACTCGCTGTAGACTCGAGCCAGCCACATAGTGTTGGAATGACCACAGTTGATCCAGAAGCAAATTTAGGAAGAACAACATTAACTGAAAACGAGAGATTGGCCTTCCAGGAAGATGATATTCATGAGTTGGCCGAAG

Ace file of the UniGene sp_v2.0_unigene4272

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00098, zf-CCHC, Zinc knuckle	-	-	7.0e-06	66%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	50%
Blast2go	nuclear export mediator factor nemf-like	-	-	3.52818e-32	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	3.52818e-32	57%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Domain of unknown function DUF814	IPR008532	-	-
Sma3	Fibronectin-binding A, N-terminal	IPR008616	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RZW2

Fln msg: Distance to subject end: 117 aas, your sequence is shorter than subject: 178 - 1092

Fln protein: TESNINQETSEKYLEVDNLGARSRQAETVATDEKHDMTAPSGKVGRGRHGKLKKIKEKYAEQDEEERQLRMALLASAGKGSKNIESKREKEVVATAKGAIQTGEADITKICYKCKKAGHVARDCPESIEDRNELAVDSSQPHSVGMTTVDPEANLGRTTLTENERLAFQEDDIHELAE

Protein Length: 179

Fln nts: GTACTGAAAGTAATATAAACCAAGAAACAAGTGAAAAATATCTAGAAGTAGACAATTTAGGTGCAAGATCTCGACAAGCTGAAACAGTTGCTACTGATGAAAAGCATGACATGACCGCACCATCTGGAAAGGTTGGGCGTGGTCGACATGGAAAGTTAAAGAAGATCAAGGAAAAGTATGCAGAACAAGATGAGGAGGAGAGACAACTTCGTATGGCATTGCTAGCTTCTGCAGGAAAAGGTTCCAAAAATATTGAATCAAAGCGAGAGAAGGAAGTTGTGGCTACTGCAAAAGGTGCTATACAAACAGGTGAAGCTGATATTACAAAAATATGCTATAAATGCAAGAAAGCAGGCCATGTTGCACGAGACTGTCCAGAGTCAATTGAAGACAGAAATGAACTCGCTGTAGACTCGAGCCAGCCACATAGTGTTGGAATGACCACAGTTGATCCAGAAGCAAATTTAGGAAGAACAACATTAACTGAAAACGAGAGATTGGCCTTCCAGGAAGATGATATTCATGAGTTGGCCGAAG

Fln Alignment:

Contig4272___APSGKVGRGRHGKLKKIKEKYAEQDEEERQLRMALLASAGKGSKNIESKREKEVVATAKGAIQ------TGEADITKICYKCKKAGHVARDCPESIEDRNELAVDSSQPHSVGMTTVDPEANLGRTTLTENERLAFQEDDIHELAE
B9RZW2______________AGSGKISRGQKSKLKKMKEKYADQDEEERSIRMALLASAGNTRKK-GGDSQNESVATDNASADKGKTPVTGSEDAPKVCYKCKKPGHLSRDCPENPD-------DSSHNHANGGPAEESHVDLGRTTL-EADRVAMEEDDIHEIGE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
427	85			14	0.993533
486		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain