SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4259

Length: 2184 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene4259
CGTCGTGACCTTGGCTGTCACTCAGCGGGGTAAAATTCTGATGGTACCAGGACATCAGGCTAAGAGTTTGGACGGAAGTTTAGGCAGAAGTAATGTCCCAGAAAGAGACGGTATTTTTCCGAGAGATTTATCGGAACAATGGAGGGAGGTCAGGTCCTCTCCCACACAAAGTGTGGGTTCTCGTGAGACAAGATCTGAGCAGCGCAACCAAATTGACAAGGACAGGAGTAAGTCAGAGAGAGAGAGAGCTGTTTTGTCTCAAAGAGGTCTTCATGGAATGAGTGCAGAGAAAGTTGTCTCAGGAGCTCCGATAAGTCCAGAGAGGGTTCTCCTAGAGATTGTTTCTGAACCTATTCCAATTATGTCTCAAAAACTTCAAGAGATGCCAGACAACTCACTGGAACATTTGCGGGAGTGTCTGCGGGAGCTGATAGGAAACAACAAAAAGAGCAAAGAACTCTCGACTTTTCAGGCGATACTACAGAGGAGAAGTGATCTGACATCAGAGGCATTATTGCAGTCTCACAGGGTTCAGTTGGAAATCTTACTTGCAGTAAAGACTGGGATTCAGGATTTTTTAAAACGTAACAGCATTCCAAATACAGAACTGGTTGAAGTCTTCTTACAATCAAGATGCAGAAACATGTCATGCCGTAGTCCACTGCCTGTAGATGACTGTGAATGTAAGATTTGCTCACAGAGGAACGGGTTCTGCAGTGCATGCATGTGTCTTGTTTGTTCGAAGTTTGACTCTGCTTCTAATACATGTAGCTGGGTTGGCTGTGACATTTGTATGCATTGGTGTCATACGGATTGTGGTATTCGCATGTCACATATCAAGAATGGTCGCAGTATCAAGGGAGCACCAGGGACCACAGAAATGCAATTCCATTGCATTGCTTGTGAGCATTCTTCTGAGATGTTTGGTTTTGTAAAAGAGGTTTTCACAACTTGTGCCAAGGAGTGGGGTGTTGAAACTCTTGCTAAAGAGCTTGATTGTGTAAGGAGAATTTTTCAAGGAAGTGAAGATTCAAGAGGTAAACAACTGTGGAGCAAGGCGGACCAGATGTTGGTGAAACTGGCGGATAAAGGTGATCCATCTGAAGTCTGTAACAGATTTGTGGCATTTTTGGCTGAATGTGATTCCAAGTTTACTGGAACAGCTAGGTTTTTATCCAAGGATTCTGTTCAATCGAATCAGAGAGATGTTAGTAACCGAGCTGCAGTCTCTGTTCAAGAAACCATGTATAATGTAGCACCTAGTTTGAACGACAAAATTGGTACTTCAGATAGGGCTAGAACTGTTCTTCAGAATTATGATCGAGATAATGAAGGGAAGAGGACAGAAGCTGTGGAATTGCAGTATAATAGGGTGAAGAATAAGGCTGAGATAGATGAGCTGGAGAGTATTGTGAGAATTAAGCAAGCTGAGGCAAGTATGTTTCAAGTGCGTGCTGATGATGCTCGCAGAGAAGCAGAAGGGCTTCAGCGTATTGCAATTGCTAAAAATGAGAAAATAGAACAAGAGTATGCATGCAAGCTTGCAAAACTATGCCTTTCCGAGACTGAGGAAAAGCGGAGGCACAAGCTTGAAGAATTGAAGATTCTAGAACAGGCTCAGCGTGAATATTATAATATGAAAATCAGAATGGAAGCAGAGATAAAAGAATTATTGATGAAAGTGGAAGCCACAAAGCGACAATTTTAGTTTAAATTCATGCAGGAACACAAGAAGCAGGTTGCAACATGAGGGGCGTGACCCAATGCTTTTCCTGTTGCACCATTTGTTTAACATATACACAACTATGGCTGAAATAGGCCATGCCCTTGTACAATTATTGTGATTTCATTTTGACTTTGGAAAATGAGACAAAGGCACTACCACAAAGTGTAACTAGTTAATATGTATTTGTTTATTTTCAACCCACCCTCCTGAATCCCATGCCTCTACAAAATTATCATGTGACAAAGTAGCATTTTCCAACAACAATCTCAGAACAGCTCATGTGTTGAGTGTTGCAGTTGGAGAACAAAACCTCCAGTTTTTTTCCTTCGTTGTTTTGTTCTCAATGTACAGGCAGAATGTACAATTCAGCAGTTTGATAATTTTCTGTGCATCATCTAATATATTATCAGCTTATTAAGGTTTGTGAGCTAAGCAAACAATAAATTCTCGTATCCTAG

Ace file of the UniGene sp_v2.0_unigene4259

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RVN5_RICCO	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	protein binding	-	-	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, PHD-type	IPR001965	-	0.0	-
Sma3	Protein of unknown function DUF1423, plant	IPR004082	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV71

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 16 aas, your sequence is shorter than subject: 569 - 623

Fln protein: VVTLAVTQRGKILMVPGHQAKSLDGSLGRSNVPERDGIFPRDLSEQWREVRSSPTQSVGSRETRSEQRNQIDKDRSKSERERAVLSQRGLHGMSAEKVVSGAPISPERVLLEIVSEPIPIMSQKLQEMPDNSLEHLRECLRELIGNNKKSKELSTFQAILQRRSDLTSEALLQSHRVQLEILLAVKTGIQDFLKRNSIPNTELVEVFLQSRCRNMSCRSPLPVDDCECKICSQRNGFCSACMCLVCSKFDSASNTCSWVGCDICMHWCHTDCGIRMSHIKNGRSIKGAPGTTEMQFHCIACEHSSEMFGFVKEVFTTCAKEWGVETLAKELDCVRRIFQGSEDSRGKQLWSKADQMLVKLADKGDPSEVCNRFVAFLAECDSKFTGTARFLSKDSVQSNQRDVSNRAAVSVQETMYNVAPSLNDKIGTSDRARTVLQNYDRDNEGKRTEAVELQYNRVKNKAEIDELESIVRIKQAEASMFQVRADDARREAEGLQRIAIAKNEKIEQEYACKLAKLCLSETEEKRRHKLEELKILEQAQREYYNMKIRMEAEIKELLMKVEATKRQF*

Protein Length: 570

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCGGGGTAAAATTCTGATGGTACCAGGACATCAGGCTAAGAGTTTGGACGGAAGTTTAGGCAGAAGTAATGTCCCAGAAAGAGACGGTATTTTTCCGAGAGATTTATCGGAACAATGGAGGGAGGTCAGGTCCTCTCCCACACAAAGTGTGGGTTCTCGTGAGACAAGATCTGAGCAGCGCAACCAAATTGACAAGGACAGGAGTAAGTCAGAGAGAGAGAGAGCTGTTTTGTCTCAAAGAGGTCTTCATGGAATGAGTGCAGAGAAAGTTGTCTCAGGAGCTCCGATAAGTCCAGAGAGGGTTCTCCTAGAGATTGTTTCTGAACCTATTCCAATTATGTCTCAAAAACTTCAAGAGATGCCAGACAACTCACTGGAACATTTGCGGGAGTGTCTGCGGGAGCTGATAGGAAACAACAAAAAGAGCAAAGAACTCTCGACTTTTCAGGCGATACTACAGAGGAGAAGTGATCTGACATCAGAGGCATTATTGCAGTCTCACAGGGTTCAGTTGGAAATCTTACTTGCAGTAAAGACTGGGATTCAGGATTTTTTAAAACGTAACAGCATTCCAAATACAGAACTGGTTGAAGTCTTCTTACAATCAAGATGCAGAAACATGTCATGCCGTAGTCCACTGCCTGTAGATGACTGTGAATGTAAGATTTGCTCACAGAGGAACGGGTTCTGCAGTGCATGCATGTGTCTTGTTTGTTCGAAGTTTGACTCTGCTTCTAATACATGTAGCTGGGTTGGCTGTGACATTTGTATGCATTGGTGTCATACGGATTGTGGTATTCGCATGTCACATATCAAGAATGGTCGCAGTATCAAGGGAGCACCAGGGACCACAGAAATGCAATTCCATTGCATTGCTTGTGAGCATTCTTCTGAGATGTTTGGTTTTGTAAAAGAGGTTTTCACAACTTGTGCCAAGGAGTGGGGTGTTGAAACTCTTGCTAAAGAGCTTGATTGTGTAAGGAGAATTTTTCAAGGAAGTGAAGATTCAAGAGGTAAACAACTGTGGAGCAAGGCGGACCAGATGTTGGTGAAACTGGCGGATAAAGGTGATCCATCTGAAGTCTGTAACAGATTTGTGGCATTTTTGGCTGAATGTGATTCCAAGTTTACTGGAACAGCTAGGTTTTTATCCAAGGATTCTGTTCAATCGAATCAGAGAGATGTTAGTAACCGAGCTGCAGTCTCTGTTCAAGAAACCATGTATAATGTAGCACCTAGTTTGAACGACAAAATTGGTACTTCAGATAGGGCTAGAACTGTTCTTCAGAATTATGATCGAGATAATGAAGGGAAGAGGACAGAAGCTGTGGAATTGCAGTATAATAGGGTGAAGAATAAGGCTGAGATAGATGAGCTGGAGAGTATTGTGAGAATTAAGCAAGCTGAGGCAAGTATGTTTCAAGTGCGTGCTGATGATGCTCGCAGAGAAGCAGAAGGGCTTCAGCGTATTGCAATTGCTAAAAATGAGAAAATAGAACAAGAGTATGCATGCAAGCTTGCAAAACTATGCCTTTCCGAGACTGAGGAAAAGCGGAGGCACAAGCTTGAAGAATTGAAGATTCTAGAACAGGCTCAGCGTGAATATTATAATATGAAAATCAGAATGGAAGCAGAGATAAAAGAATTATTGATGAAAGTGGAAGCCACAAAGCGACAATTTTAG___TTTAAATTCATGCAGGAACACAAGAAGCAGGTTGCAACATGAGGGGCGTGACCCAATGCTTTTCCTGTTGCACCATTTGTTTAACATATACACAACTATGGCTGAAATAGGCCATGCCCTTGTACAATTATTGTGATTTCATTTTGACTTTGGAAAATGAGACAAAGGCACTACCACAAAGTGTAACTAGTTAATATGTATTTGTTTATTTTCAACCCACCCTCCTGAATCCCATGCCTCTACAAAATTATCATGTGACAAAGTAGCATTTTCCAACAACAATCTCAGAACAGCTCATGTGTTGAGTGTTGCAGTTGGAGAACAAAACCTCCAGTTTTTTTCCTTCGTTGTTTTGTTCTCAATGTACAGGCAGAATGTACAATTCAGCAGTTTGATAATTTTCTGTGCATCATCTAATATATTATCAGCTTATTAAGGTTTGTGAGCTAAGCAAACAATAAATTCTCGTATCCTAG

Fln Alignment:

Contig4259___VRSSPTQSVGSRETRSEQRNQID----KDRSKSERERAVLSQRGLHGMSAEKVVSGAPISPERVLL-EIVSEPIPIMSQKLQEMPDNSLEHLRECLRELI---GNNKKSKELSTFQAILQRRSDLTSEALLQSHRVQLEILLAVKTGIQDFLKRN-SIPNTELVEVFLQSRCRNMSCRSPLPVDDCECKICSQRNGFCSACMCLVCSKFDSASNTCSWVGCDICMHWCHTDCGIRMSHIKNGRSIKGAPGTTEMQFHCIACEHSSEMFGFVKEVFTTCAKEWGVETLAKELDCVRRIFQGSEDSRGKQLWSKADQMLVKLAD-KGDPSEVCNRFVAFLAECDSKFTGTARFLSKDSVQSNQRDVSNRAAVSVQETMYNVAPSLNDKIGTSDRARTVLQNYDRDNEGKRTEAVELQYNRVKNKAEIDELESIVRIKQAEASMFQVRADDARREAEGLQRIAIAKNEKIEQEYACKLAKLCLS
A9NV71______________VRESPSESASSRETWPTEQTRVEVVAEHSRHKKEMEREKETEE--ESERPEQTVVHRVANSDRILLRDIAGGGLDVIAERMREQPEEFLEDLKTELRVILEGTGGLQHREEFALLQKLVQGRSDLTPESMSRAHRVQLEVFVSIKTGIQAFLHPDISVTQTVLIEVFAHKRCRNIACQSQLPADDCSCEVCSTKSGFCSLCMCVICSKFDFEVNTCRWVGCDTCSHWTHTDCAIRAGQISMGTSLKGVAGSSEMLFRCRACKRTSELLGWVKDVFQHCALDWDREALMKEFDCVRRVFHGSEDSKGRKLFWKSEELLESLKNGVADEAAVCKVMQRFFQELETEVVKNVE--AEERRMIAPQEACNRIADVVQEVVRKMEAVAEEKARVFKKARLTLDMCDRELEDKSRELAELQFERQRKKQQIEELEAIVRLKQAEADMFQLKADEARREADRLQRIALAKSEKAEEEYASRYLKLRLN

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
499	20			80	0.995493
500		20	80		0.995493
503		80		20	0.995493
666		20		80	0.995493
672			80	20	0.995493
750	20		80		0.995493
794	83		16		0.994512
1146	90			10	0.90298
1147	10			90	0.90298
1149	10			90	0.90298
1363	12		87		0.992554
1364	87	12			0.992554
1365	87	12			0.992554
1370	87			12	0.992554
1375	87	12			0.992554
1407	14		85		0.993533
1612	87	12			0.992554
1613			12	87	0.992554
1616			12	87	0.992554
1617	87			12	0.992554
1620	87	12			0.992554
1622	87			12	0.992554
1633		14	85		0.993533
1697		87		12	0.992554
1699	87		12		0.992554
1888		31		68	1.0
2028	28	28			1.0
2029	28	71			1.0
2030	66		33		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
235	248	AG AG AG AG AG AG AG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain