SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4165

Length: 856 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene4165

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable serine/threonine-protein kinase WNK2 n=3 Tax=Oryza sativa RepID=WNK2_ORYSJ	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	protein	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	73%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	73%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	73%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	73%
Blast2go	heme binding	GO:0020037	Molecular Function	73%
Blast2go	ATP binding	GO:0005524	Molecular Function	73%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	73%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSG2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 446 aas, your sequence is shorter than subject: 272 - 885

Fln protein: DLGLAAILRQAHSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLEMVTFEYPYSECANAAQIYKKVTSGKKPAALDKVKDPEVREFVEKCLATASRRLPARELLMDPFLQYDGGEIMDQVPRPTPLYLLGVGPKELSTIVEEPSQGSKPLQSNCVQKLADIKRAQDLTLRAPSNTMVGSCLPTESAGGDDYQHPESYLEGEGSPSPARVNRGFTVKGQRKDDNTVYLRLRIADSEGHVPNVSFLGNLLYAFFSSMVDCVQEYFLLILK*

Protein Length: 273

Fln nts: GACCTTGGACTGGCAGCAATTCTTCGCCAGGCACATTCAGCTCATAGTGTGATTGGCACACCAGAGTTCATGGCTCCAGAACTTTATGAAGAAGAGTACAATGAGTTGGTTGATATTTATGCTTTTGGTATGTGTCTGTTGGAGATGGTTACTTTCGAATATCCATACAGTGAGTGTGCAAATGCAGCCCAGATTTACAAGAAAGTGACCTCGGGTAAAAAACCTGCTGCCTTGGATAAAGTAAAGGATCCTGAAGTCCGAGAGTTTGTAGAAAAATGCTTAGCTACTGCATCCAGAAGGTTGCCTGCCAGAGAGTTGTTGATGGATCCCTTTCTGCAGTATGATGGTGGCGAGATTATGGATCAAGTACCTCGTCCTACTCCACTGTATCTGTTGGGGGTTGGTCCTAAAGAGTTGTCTACAATTGTAGAAGAACCCAGTCAGGGTAGCAAACCCTTACAATCAAACTGTGTGCAGAAGCTTGCAGATATAAAAAGAGCACAAGACCTGACATTGCGAGCCCCCTCAAATACCATGGTGGGATCTTGTTTGCCTACTGAATCAGCTGGAGGAGATGATTATCAACATCCAGAGAGTTACTTGGAAGGTGAAGGCAGTCCTTCTCCGGCAAGGGTGAATAGAGGTTTCACAGTGAAGGGTCAAAGAAAAGATGATAACACAGTATaCTTAAGACTTAGGATTGCAGATTCAGAAGGTCATGTTCctAATgTTaGCTTCCTTGGCAACTTACTGTATGCCTTCTTCTCCTCCATGGTTGATTGTGTACAGGAGTATTTCTTACTTATTTTAAAATGAATTTCCAGGTCATGTTCGCAATATTCACTTCCCCTTTGAC

Fln Alignment:

Contig4165___DLGLAAILRQAHSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLEMVTFEYPYSECANAAQIYKKVTSGKKPAALDKVKDPEVREFVEKCLATASRRLPARELLMDPFLQYDGGEIMDQVPRPTPLYLLGVGPKELSTIVEEPSQGSKPLQSNCVQKLADIKRAQDLTLRA-PSNTMVGSCLPTESAGGDDYQHPESYLEGEGSPSPARV-------NRGFTVKGQRKDDNTVYLRLRIADSEGHVPNVSF
C0PSG2______________DLGLAAILCKSHSAHSVIGTPEFMAPELYDEEYNELVDIYAFGMCLLEMLTFEYPYSECSNPAQIYKKVTSGKKPAALYKVKDPEVRQFVEKCLVTVSRRLPARELLMDPFLQTDEHGLEYSFSR---LDFCRDDVGELGPLLREP----------------NIEAFQNGGHKAHQSIHFVHPC----SKNGISV-HYENKKQRRVVPLPSYFREDSMSHNMDFTVKGKKREDDTIFLRLRIADTEGRIRNIYF

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
690	66		33		0.997452
726	33		66		0.997452
727		33		66	0.997452
730			66	33	0.997452
731		66		33	0.997452
734	33			66	0.997452
735	66	33			0.997452
738		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain