SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4152

Length: 2572 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene4152
CGTCGTGACCTTGGCTGTCACTCATTTTGTATTGCTGGAGAGGTTCCTGAATGTAAGATTAAAGATCAGTCAGAAGCCGTCAAGCCGAAAGTCTCTAATGCCATGAATAAATTTGATAATGTTATACGAGAGACTGTATCTAATTGTGCAAAGCAAGAAGCTTCTTCATTTGAAAAGCCTGTGTTATGTGCTTCGGGAGTTACTACTGTGAAGGCAGATTCAGATAAAGAAGAAGAAGAAGATGAAGTAATTGTCTTTAAACCCACTGCAGCAGAAAAACATTCAGAGTTAAATACTACTTCAAATTCACAACAGAACCCTGTTGCATCTTCAAGTATTCAGAATCTGACTCCATTGTGTCTTCCTCAAGATCATCAGCAAAGCTTCTCCAATTTCCCCCCTCCTACTGACTTGCCAATACAGATACCTGGGTATTCTTCAACACTGACTACTGGGACTGACCTTTCTTTGGGAGCATACACAAATCCCCATGAAGTTTCCCAATTATTTGAGAGTTCTGCAAGTTCTGCTGATCATTGGTCAACTGGTATTGGAACATCTACTGTTGGCGCTAACTCAATTGTCTTGAAAGTTGGGGTATGAAAAATTACACTGCACCATTTTTGAATAGTCATGCAGGTGTCACTGGCTTTGGAAATTTTAGTCAACAGCCTGCTCAGCAGATAAATCATCTCCATCCTGCATGGTATAGAGATGATGAAGCACTTGTTTTTAATGGGATGACAAACTTGAATCTTGGTCATCATTTTCAAGAAAACGGGTCTTTGTTAAAGTCAGAGCTTCCTGCCAGTAATCTGGGAAAAGTCGAGTCTGTTTCCACACATTCAAATTGGGTTCCTTCTCAAAGTTTGTATTCATCAACTCCACTTGGAGTCTCTGTGAGTACTGCTGTTGCTGGCATGTCAGACAAGCCAATTTCCAATGATCTTTCCTCAGCCATGGTTCATGCAAACTCCTGTCAACCAAAAATCTCCAGTGAACCTCATGTAACAAACTTTGAATCATCAGCACTGTCAAAGGTTGATACATCAACTACCAAAACTAGTATAACTACCAAGCCGACAAACACCCCTAAACTAAGCATTAAAAAAGGACATGTGAATAAACCTGTTCGCCATTTTGGACCTCCACCTGGCTTTGGTCCTGTACCTTCAAGACTGCTAGATAGTTCCAAGGCTGATTTATTGCATTCTAATCCTGGAGTCACCTGTGTAAGTGAACAGATGGTTCAGAGCAATGAACAGCCCCAAATGGATGACTACAGCTGGTTGGATGGATACACACCATCAAATGATGGAGAGAGAAATGATTCACGTATAGCTCAGCCAGGCTATCCTCTTTTGCCTACTACTGACAATCTGATCAGTGCTGCAGTGAAATTTCCTTTTCCAGGCAAGCAGGTTCCAAGTCTGCCAATATGCCAAGATCAGCAATTACATGTGAAGCAGCAGCAGCTTCAATACAATGCCCAACAACAGCAGCAGCATCAAAGCCAGGTGCTTTTGCCAAAACAGCAACAACAGCAGTCTTTGTGGTCTGCGAGGTACTTTGGTTGAGATCCGTAGGTGCTATGAAGCCAATTCTAGGATTGAAACGGATACCATCAGGAAATGCTTGTTGGTTGGAGTAATGGTTACTCGTGGTTATGCATCAAAGCTTTGACCTTGGCTCATGTTCTCTATTGAAAACTACTGCTTGCTTTGTGGCCTTGTCCGAGCTATAAGTATTTTCCATCAGTGCCCTACAGACCAGGCACAATCAATGGGCTTTTCCTTGACTTTGTCTACCTCATGACCATTATGCAATATATATCTAGATAAAGCTTGATTTGTCGTATCTGACATTTCACCTGGAATTTGCTGGCTTGAATGGTCTTAAAGTGCTTTTATTCTGCAGAGGCTTAGCAAAATCCAGAGGTGGAGATTACCTCGAAAATTATTCAAGTGGATCAGTAAGTTTTGAACTGGAGATATTCACATTGGGTGGATTAATGAAAAAAGTGCAGTGTAAGAAGGTTCCTTGTTTCACCACTGGTTTCAGAGATTATCAAGAATACTGTCATCACAGTGGAGATTTTGGATTGCAGATGTGAGAATCAAGGGATCTATGCAGTTGTCTTTTGATAATATCAGGAGGACTACTTTCAGTATATACATGGACTCACAATTCTACTTGGGGTTGTGAAGGAAGCCAATTTTGTGGGCTAAAATGTTGTTGTGTCTGTTTTGCTTTAATAACAAGGATTTTGATGCAGGGAAATGCTTCAACATAGTATTTGGTACCTGGGTTTCTTCCACTTAGGATTACGAGTGCTGGTAATAATGCTTCATTGAACCCAGGCACAAGTTTTGGATTAAGAATTTGTTGATAAGCTTCCATGGTTGTATGCATCTTACTACTTTTCATGAAAATAATTGTAACCAGACATTGACAATATTTCTCAGTTCTGTTTTATTAGCTTTTCTGGGGATATTAATACTACGAGACATATATTCTTAATAATCAGTATGCTTTTCATATATTCTAATTAATCAGTATGCTTTTCTGTTTC

Ace file of the UniGene sp_v2.0_unigene4152 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	unknown [Picea sitchensis]	-	-	6.38992e-43	95%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADN8

Fln msg: Separated hits, possible frame ERROR between 1639 and 1647,

Fln protein: MPRSAITCEAAAASIQCPTTAAASKPGAFAKTATTAVFVVCEVLWLRSVGAMKPILGLKRIPSGNAxxxxSNGYSWLCIKALTLAHVLY*KLLLALWPCPSYKYFPSVPYRPGTINGLFLDFVYLMTIMQYISR*

Protein Length: 136

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTGTATTGCTGGAGAGGTTCCTGAATGTAAGATTAAAGATCAGTCAGAAGCCGTCAAGCCGAAAGTCTCTAATGCCATGAATAAATTTGATAATGTTATACGAGAGACTGTATCTAATTGTGCAAAGCAAGAAGCTTCTTCATTTGAAAAGCCTGTGTTATGTGCTTCGGGAGTTACTACTGTGAAGGCAGATTCAGATAAAGAAGAAGAAGAAGATGAAGTAATTGTCTTTAAACCCACTGCAGCAGAAAAACATTCAGAGTTAAATACTACTTCAAATTCACAACAGAACCCTGTTGCATCTTCAAGTATTCAGAATCTGACTCCATTGTGTCTTCCTCAAGATCATCAGCAAAGCTTCTCCAATTTCCCCCCTCCTACTGACTTGCCAATACAGATACCTGGGTATTCTTCAACACTGACTACTGGGACTGACCTTTCTTTGGGAGCATACACAAATCCCCATGAAGTTTCCCAATTATTTGAGAGTTCTGCAAGTTCTGCTGATCATTGGTCAACTGGTATTGGAACATCTACTGTTGGCGCTAACTCAATTGTCTTGAAAGTTGGGGTATGAAAAATTACACTGCACCATTTTTGAATAGTCATGCAGGTGTCACTGGCTTTGGAAATTTTAGTCAACAGCCTGCTCAGCAGATAAATCATCTCCATCCTGCATGGTATAGAGATGATGAAGCACTTGTTTTTAATGGGATGACAAACTTGAATCTTGGTCATCATTTTCAAGAAAACGGGTCTTTGTTAAAGTCAGAGCTTCCTGCCAGTAATCTGGGAAAAGTCGAGTCTGTTTCCACACATTCAAATTGGGTTCCTTCTCAAAGTTTGTATTCATCAACTCCACTTGGAGTCTCTGTGAGTACTGCTGTTGCTGGCATGTCAGACAAGCCAATTTCCAATGATCTTTCCTCAGCCATGGTTCATGCAAACTCCTGTCAACCAAAAATCTCCAGTGAACCTCATGTAACAAACTTTGAATCATCAGCACTGTCAAAGGTTGATACATCAACTACCAAAACTAGTATAACTACCAAGCCGACAAACACCCCTAAACTAAGCATTAAAAAAGGACATGTGAATAAACCTGTTCGCCATTTTGGACCTCCACCTGGCTTTGGTCCTGTACCTTCAAGACTGCTAGATAGTTCCAAGGCTGATTTATTGCATTCTAATCCTGGAGTCACCTGTGTAAGTGAACAGATGGTTCAGAGCAATGAACAGCCCCAAATGGATGACTACAGCTGGTTGGATGGATACACACCATCAAATGATGGAGAGAGAAATGATTCACGTATAGCTCAGCCAGGCTATCCTCTTTTGCCTACTACTGACAATCTGATCAGTGCTGCAGTGAAATTTCCTTTTCCAGGCAAGCAGGTTCCAAGTCTGCCAAT_-_ATGCCAAGATCAGCAATTACATGTGAAGCAGCAGCAGCTTCAATACAATGCCCAACAACAGCAGCAGCATCAAAGCCAGGTGCTTTTGCCAAAACAGCAACAACAGCAGTCTTTGTGGTCTGCGAGGTACTTTGGTTGAGATCCGTAGGTGCTATGAAGCCAATTCTAGGATTGAAACGGATACCATCAGGAAATGCTTGxxxxxxxxxGAGTAATGGTTACTCGTGGTTATGCATCAAAGCTTTGACCTTGGCTCATGTTCTCTATTGAAAACTACTGCTTGCTTTGTGGCCTTGTCCGAGCTATAAGTATTTTCCATCAGTGCCCTACAGACCAGGCACAATCAATGGGCTTTTCCTTGACTTTGTCTACCTCATGACCATTATGCAATATATATCTAGATAA___AGCTTGATTTGTCGTATCTGACATTTCACCTGGAATTTGCTGGCTTGAATGGTCTTAAAGTGCTTTTATTCTGCAGAGGCTTAGCAAAATCCAGAGGTGGAGATTACCTCGAAAATTATTCAAGTGGATCAGTAAGTTTTGAACTGGAGATATTCACATTGGGTGGATTAATGAAAAAAGTGCAGTGTAAGAAGGTTCCTTGTTTCACCACTGGTTTCAGAGATTATCAAGAATACTGTCATCACAGTGGAGATTTTGGATTGCAGATGTGAGAATCAAGGGATCTATGCAGTTGTCTTTTGATAATATCAGGAGGACTACTTTCAGTATATACATGGACTCACAATTCTACTTGGGGTTGTGAAGGAAGCCAATTTTGTGGGCTAAAATGTTGTTGTGTCTGTTTTGCTTTAATAACAAGGATTTTGATGCAGGGAAATGCTTCAACATAGTATTTGGTACCTGGGTTTCTTCCACTTAGGATTACGAGTGCTGGTAATAATGCTTCATTGAACCCAGGCACAAGTTTTGGATTAAGAATTTGTTGATAAGCTTCCATGGTTGTATGCATCTTACTACTTTTCATGAAAATAATTGTAACCAGACATTGACAATATTTCTCAGTTCTGTTTTATTAGCTTTTCTGGGGATATTAATACTACGAGACATATATTCTTAATAATCAGTATGCTTTTCATATATTCTAATTAATCAGTATGCTTTTCTGTTTC

Fln Alignment:

Contig4152___MPRSAITCEAAAA---SIQCPTTAAASKPGXXXXXXXXXXXXVCEVLWLRSVGAMKPILGLKRIPSGNACxxxSNGYSWLCIKALTLAHVLY*KLLLALWPCPSYKYFPSVPYRPGTINGLFLDFVYLMTIMQYISR
D5ADN8______________MPGSAVPFEAAAAAAASIQGSTTAATSKPGAFAKTATPAVFVVCEVLWLRSVGSIKPILEMKRIPSGNACxxxSNGYSRLCIKALTLALVLYRKLMLALWPCPSYKYFPSVPYRPGTINGLFLDFVYLMTIMQYISR

SSRs (tot: 2)

Start position	End position	Sequence	Length
1097	1108	GCT GCT GCT GCT	12
2331	2346	TCT TCT TCT TCT TCT T	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain