SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4151

Length: 1042 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene4151

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Expansin-like protein n=1 Tax=Cunninghamia lanceolata RepID=A2ICD7_CUNLA	-	-	52%
FL-Next	tr=Expansin-like protein; Cunninghamia lanceolata (China fir).	-	-	53%
Blast2go	expansin-like protein	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	extracellular region	GO:0005576	Cellular Component	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	PAC motif	IPR001610	-	-
Sma3		IPR005132	-	-
Sma3	Major pollen allergen Lol pI	IPR005795	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3		IPR014734	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A2ICD7

Fln msg:

Fln protein: MATQAPVVFVLYCILGVNILIMFPSLALGCTSCVHQSKLAYYAYQGAVDVGACGYGSFAATLYSGNVGGSSLDLYRNGVACGACYQMRCTDSKLCSKSGTTIVVTDFTESSQTDFVVTRSTFSSMALPDQGDQLLKAGIIDIEYKRVPCQYKDQNMSVKVDKLSRYPNYLAVQFLYQGGQTDIVSVDVEQVGSSEKHDLKRNYGAVWDIENPPEGPLQFGFVIFSGYNGKRVWPTKPVLPSDWKVGGVYDSGLQINDVSLEKCSPCDDNDDGWGDSPIP*

Protein Length: 281

Fln nts: GGCCAATTCAATTCAAGCATC_-_ATGGCCACTCAAGCACCAGTTGTCTTCGTCCTTTATTGCATTTTGGGTGTAAATATTCTCATCATGTTCCCAAGTTTAGCGTTAGGTTGCACCAGCTGTGTCCATCAATCTAAACTAGCCTATTATGCTTACCAAGGGGCAGTTGATGTTGGCGCCTGCGGATATGGATCATTTGCAGCAACTCTCTATaGCGGGAATGTAGGAGGATCCAGcCtTGATCTCTACAGAAATGGCGTTGCGTGTGGCGCATGCTATCAGATGAGATGCACAGACTCCAAATTATGCAgCAAGTCAGGGACTACAATAGTGGTTACGGACTTCACAGAGAGCAGCCAAACAGATTTTGTTGTAACCCGCAGCACATTCTCAAGCATGGCACTACCAGATCAGGGGGACCAGCTTCTTAAGGCCGGGATTATAGATATCGAATATAAAAGGGTCCCTTGCCAGTACAAGGACCAGAATATGTCGGTGAAGGTGGACAAACTGAGCCGGTACCCTAACTATCTTGCTGTGCAATTTCTGTACCAAGGAGGCCAGACAGACATAGTTTCTGTGGATGTTGAGCAGGTGGGTTCTTCTGAGAAACATGACTTGAAGCGAAACTATGGCGCAGTTTGGGACATAGAGAATCCGCCAGAGGGTCCTCTGCAGTTTGGATTTGTGATATTCAGCGGGTACAATGGGAAAAGGGTGTGGCCGACAAAGCCTGTGCTTCCCTCTGACTGGAAGGTAGGGGGTGTTTATGATTCTGGACTTCAAATCAATGACGTTTCTTTGGAGAAGTGTAGTCCGTGTGATGACAACGACGATGGATGGGGCGACTCACCAATACCATGA___ACAGACGTATAAAAATTGTCAACTGCGATCGTACATGGTTGAATCCATGGATTCAAGAAGCTAATGGGGAAACTCAGATCGCTTTGTCTTTGAATCAACGTTGTAGAGAAGTCATCATCACCACTTTGTATATGTAATAAGTGTTATAAATAAAGTTTCGCAGGTTGGCGTAAAAAATTTG

Fln Alignment:

Contig4151___CILGVNILIMFP-SLALGCTSCVHQSKLAYYAYQGAVDVGACGYGSFAATLYSGNVGGSSLDLYRNGVACGACYQMRCTDSKLCSKSGTTIVVTDFTESSQTDFVVTRSTFSSMALPDQGDQLLKAGIIDIEYKRVPCQYKDQNMSVKVDKLSRYPNYLAVQFLYQGGQTDIVSVDVEQVGSSEKHDLKRNYGAVWDIENPPEGPLQFGFVIFSGYNGKRVWPTKPVLPSDWKVGGVYDSGLQINDVSLEKCSPCDDND
A2ICD7______________CCAGWILMLMFILPTAFCCDRCLHKSKVSYTSSSQPVNAGACGYESLAGTLNSGDVATASAKIYREGVGCGGCYQIRCTDPAICSKSGVKVVVSDLTQNNQTDFVLSTRTFSKMAQPTKSSQLIKMGLVDTEYKRIPCEYPGKNMTVKIDKMSNYPYFLAVQFLYQGGQTDITGVEVAQVGTSNWKFMTRNYGAVWSMQQPPEGPMSLRVLVTSGYDGFWVWAKTAVLPSNWKVGSVYDSGVQIKEIAQEGCSPCDSQD

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
519		80		20	0.995493
567		80		20	0.995493
645		85	14		0.993533
667		71	28		1.0
700			28	71	1.0
707		28	71		1.0
715			71	28	1.0
719		28	71		1.0
730		71		28	1.0
732		28		71	1.0
744		16		83	0.994512
751	83		16		0.994512
766			11	88	0.923564
767	88	11			0.923564
768		11		88	0.923564
769		11	88		0.923564
772		11		88	0.923564
793			90	10	0.90298
794	10			90	0.90298
795		10		90	0.90298
796	11			88	0.923564
800		25		75	1.0
817		20		80	0.995493
820		20	80		0.995493
826	60		40		1.0
833	40		20		1.0
844		40	60		1.0
847	40			60	1.0
850		80	20		0.995493
892			75	25	0.996473
935		20		80	0.995493
939	80			20	0.995493
968	80	20			0.995493
998	75		25		0.996473
1001	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain