SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4125

Length: 2207 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene4125
GAGTGTGGCAGGGACGACGCAGAGATGGAGATGGTGACAGTTCACTGCGTCAATGTTCCGCCCGGAGAAGGCATCGTGCGGGAAGTGAAGCACGCAGTGAAAGAAACTCTGTTCCCCGATGACCCATTTCGGCAATTCAAGAACCAGCCAAGGTCGAGAAAATGTGTACTTGGGTTACAGTATGTGTTTCCCATCTTAGAATGGGCGCCCAAATATTCTCGGAACCTGTTGAAATCTGATATTCTGTCTGGCATCACTATTGCCAGTCTTGCCATTCCACAGGGAATAAGCTATGCGAAGTTGGCTAACCTACCTCCTGTGATGGGGCTCTATTCCAGCTTTGTTCCTCCCCTGATATATGCAATGCTGGGGAGTTCCAAGGATCTGGCGGTGGGTACAATCGCTGTTGTATCGCTGCTTCTTGGTTCGGTGATCGGTGACGCGGTCTCGCCAACAGAAAAGCCTGAACTTTATATTGGATTAGCCATGACTGCCACTTTTTTTGCTGGCGTCTTCCAAGCAGCTCTGGGTATTTTCAGGCTAGGTTTCATCATAGACCTCCTTTCCCATGCAACTATTGAAGGGTACATGACGGGATCAGCGATTATTGTATCCCTCCAACAGCTCAAAGGAATCCTTGGACTCGAGAAATTTACCAAAGAGACCGACATAATTTCTGTCATCACCTCAGCAACCAAACAAGTGCACAAGTGGAGATGGCAAAGCATCATACTCGGTCTGGGTTTTCTGATTTTCCTCTTCACTGCCCGCTACATCAGCAAGAGAAGGAAACGGTTATTCTGGGTCTCGGCTGCTGCTCCACTGACATCTGTCATTCTGGGTAGCTTGCTGGTCTTGGCAACGCGTGCAGATAATCATGGAGTGCAAATTGTGGGTACCTTGAAAAAGGGTCTAAACCCGTTGTCCGTTGGCAAGTTAGTATTTCATGGAGAGTATTTGAGGACCAGTTTGAAGGCAGGGCTTATAGCCGGTCTCATTTCCCTGGCTGAAGGGTTAGCGGTTGGAAGAACATTTGCACTCTTCAAGAACTATCAAATTGATGGCAATAAGGAGATGGTTGCGATTGGAATGATGAATGTAGTCGGTTCCTGCACTTCCTGTTATGTTTCAACAGGTGCTTTTTCGAGGACAGCAGTTAATTTCAATGCTGGATGCAAAACAGCAGCCTCAAATATAGTCATGGCTATTGCCATGATGTTCACTCTTCTATTTCTAACTCCTCTCTTCCACTACACCCCCAATGCGGTGCTGTCGGCCATTATCGCCTCAGCAATGCTTGGTCTGATCGACATCCATACTGCAATTCATCTGTGGAAGGTGGATAAGATCGACTTCTTCGTCTTCTTGGGAGGCTTGTTGGGTGTTGTTTTTGGCAGCGTTGAAATTGGTTTGATCACAGCGGTATCCATCTCCCTGGTGAGATTATTGATGCACGTGATGAGGCCTCATACTGCAGTACTGGGCAACATTCCTGGAACGTGTGTGTATAGAAGTAGAGAGCAATATCCTGATGCAATCAGAGTTCAGGGTATTCTCATACTGCGCATAGATTCTCCAATCTTTTTCGCCAACTCCAGTTATCTGCAAGAAAGGGTAATTAGATGGATAGAAGATGAAAAGGAAATGCATCATCAGACTCTGCACTACGTAATCCTGGACATGGGTCCTGTGACGAGCATCGACACAAGCGGAATCAGCGCCCTTGAGGAGCTCAAGAAGAAATTGGATCTGCGAAGACTTCAGCTTGTAATGGCAAACCCTGGGAGGCAGACGATAGAGAAGCTGAACAATTCAAAATTTACAGAAATTCTGGGGAAGAAATGGGTGTTTTTGACAGTGGACGAGGCCGTTGTCACCTGCAAAACTCTACTTCACCGTGAAGTGCTCGACAACGCCGGTCAGGTGATCCACTAGAAAGAAAGCTTCTCAGTTCATTCCTGTATCGAATCTGTCTGCAGGGAATCGCCGAAACAAAAAATCGGGCGGATTCAATTTTTTTGTAATATGAAAAAAAGGCTTAGAGGAGGCTATTTGTCCAATCAGAGCCGATCCAAGCCGAGCTGGGTACTACATAATTTAATTCATATTTATTTATCCGTGATACCAAATCCATCTCAGTTTTGAAAAAGATTCTGAATGATTCTGAATTCACTATGAGAGATGACCAAAGATCAATATGTACGGAC

Ace file of the UniGene sp_v2.0_unigene4125

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sulfate/bicarbonate/oxalate exchanger and transporter sat-1 n=3 Tax=Populus RepID=B9HUR7_POPTR	-	-	58%
FL-Next	sp=Sulfate transporter 3.1; Arabidopsis thaliana (Mouse-ear cress).	-	-	64%
Blast2go	sulfate bicarbonate oxalate exchanger and transporter sat-1	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	sulfate transport	GO:0008272	Biological Process	78%
Blast2go	transmembrane transport	GO:0055085	Biological Process	78%
Blast2go	secondary active sulfate transmembrane transporter activity	GO:0008271	Molecular Function	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Sulphate anion transporter	IPR001902	-	-
Sma3	Sulphate transporter/antisigma-factor antagonist STAS	IPR002645	-	-
Sma3		IPR002917	-	-
Sma3	tRNA modification GTPase TrmE	IPR004520	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR005289	-	-
Sma3	Sulphate transporter	IPR011547	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-
Sma3	Sulphate anion transporter, conserved site	IPR018045	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	GTP-binding protein TrmE, N-terminal	IPR018948	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SV13

Fln msg: atg_distance in limit (1-15): atg_distance = 6, your sequence is shorter than subject: 637 - 658

Fln protein: MEMVTVHCVNVPPGEGIVREVKHAVKETLFPDDPFRQFKNQPRSRKCVLGLQYVFPILEWAPKYSRNLLKSDILSGITIASLAIPQGISYAKLANLPPVMGLYSSFVPPLIYAMLGSSKDLAVGTIAVVSLLLGSVIGDAVSPTEKPELYIGLAMTATFFAGVFQAALGIFRLGFIIDLLSHATIEGYMTGSAIIVSLQQLKGILGLEKFTKETDIISVITSATKQVHKWRWQSIILGLGFLIFLFTARYISKRRKRLFWVSAAAPLTSVILGSLLVLATRADNHGVQIVGTLKKGLNPLSVGKLVFHGEYLRTSLKAGLIAGLISLAEGLAVGRTFALFKNYQIDGNKEMVAIGMMNVVGSCTSCYVSTGAFSRTAVNFNAGCKTAASNIVMAIAMMFTLLFLTPLFHYTPNAVLSAIIASAMLGLIDIHTAIHLWKVDKIDFFVFLGGLLGVVFGSVEIGLITAVSISLVRLLMHVMRPHTAVLGNIPGTCVYRSREQYPDAIRVQGILILRIDSPIFFANSSYLQERVIRWIEDEKEMHHQTLHYVILDMGPVTSIDTSGISALEELKKKLDLRRLQLVMANPGRQTIEKLNNSKFTEILGKKWVFLTVDEAVVTCKTLLHREVLDNAGQVIH*

Protein Length: 638

Fln nts: GAGTGTGGCAGGGACGACGCAGAG_-_ATGGAGATGGTGACAGTTCACTGCGTCAATGTTCCGCCCGGAGAAGGCATCGTGCGGGAAGTGAAGCACGCAGTGAAAGAAACTCTGTTCCCCGATGACCCATTTCGGCAATTCAAGAACCAGCCAAGGTCGAGAAAATGTGTACTTGGGTTACAGTATGTGTTTCCCATCTTAGAATGGGCGCCCAAATATTCTCGGAACCTGTTGAAATCTGATATTCTGTCTGGCATCACTATTGCCAGTCTTGCCATTCCACAGGGAATAAGCTATGCGAAGTTGGCTAACCTACCTCCTGTGATGGGGCTCTATTCCAGCTTTGTTCCTCCCCTGATATATGCAATGCTGGGGAGTTCCAAGGATCTGGCGGTGGGTACAATCGCTGTTGTATCGCTGCTTCTTGGTTCGGTGATCGGTGACGCGGTCTCGCCAACAGAAAAGCCTGAACTTTATATTGGATTAGCCATGACTGCCACTTTTTTTGCTGGCGTCTTCCAAGCAGCTCTGGGTATTTTCAGGCTAGGTTTCATCATAGACCTCCTTTCCCATGCAACTATTGAAGGGTACATGACGGGATCAGCGATTATTGTATCCCTCCAACAGCTCAAAGGAATCCTTGGACTCGAGAAATTTACCAAAGAGACCGACATAATTTCTGTCATCACCTCAGCAACCAAACAAGTGCACAAGTGGAGATGGCAAAGCATCATACTCGGTCTGGGTTTTCTGATTTTCCTCTTCACTGCCCGCTACATCAGCAAGAGAAGGAAACGGTTATTCTGGGTCTCGGCTGCTGCTCCACTGACATCTGTCATTCTGGGTAGCTTGCTGGTCTTGGCAACGCGTGCAGATAATCATGGAGTGCAAATTGTGGGTACCTTGAAAAAGGGTCTAAACCCGTTGTCCGTTGGCAAGTTAGTATTTCATGGAGAGTATTTGAGGACCAGTTTGAAGGCAGGGCTTATAGCCGGTCTCATTTCCCTGGCTGAAGGGTTAGCGGTTGGAAGAACATTTGCACTCTTCAAGAACTATCAAATTGATGGCAATAAGGAGATGGTTGCGATTGGAATGATGAATGTAGTCGGTTCCTGCACTTCCTGTTATGTTTCAACAGGTGCTTTTTCGAGGACAGCAGTTAATTTCAATGCTGGATGCAAAACAGCAGCCTCAAATATAGTCATGGCTATTGCCATGATGTTCACTCTTCTATTTCTAACTCCTCTCTTCCACTACACCCCCAATGCGGTGCTGTCGGCCATTATCGCCTCAGCAATGCTTGGTCTGATCGACATCCATACTGCAATTCATCTGTGGAAGGTGGATAAGATCGACTTCTTCGTCTTCTTGGGAGGCTTGTTGGGTGTTGTTTTTGGCAGCGTTGAAATTGGTTTGATCACAGCGGTATCCATCTCCCTGGTGAGATTATTGATGCACGTGATGAGGCCTCATACTGCAGTACTGGGCAACATTCCTGGAACGTGTGTGTATAGAAGTAGAGAGCAATATCCTGATGCAATCAGAGTTCAGGGTATTCTCATACTGCGCATAGATTCTCCAATCTTTTTCGCCAACTCCAGTTATCTGCAAGAAAGGGTAATTAGATGGATAGAAGATGAAAAGGAAATGCATCATCAGACTCTGCACTACGTAATCCTGGACATGGGTCCTGTGACGAGCATCGACACAAGCGGAATCAGCGCCCTTGAGGAGCTCAAGAAGAAATTGGATCTGCGAAGACTTCAGCTTGTAATGGCAAACCCTGGGAGGCAGACGATAGAGAAGCTGAACAATTCAAAATTTACAGAAATTCTGGGGAAGAAATGGGTGTTTTTGACAGTGGACGAGGCCGTTGTCACCTGCAAAACTCTACTTCACCGTGAAGTGCTCGACAACGCCGGTCAGGTGATCCACTAG___AAAGAAAGCTTCTCAGTTCATTCCTGTATCGAATCTGTCTGCAGGGAATCGCCGAAACAAAAAATCGGGCGGATTCAATTTTTTTGTAATATGAAAAAAAGGCTTAGAGGAGGCTATTTGTCCAATCAGAGCCGATCCAAGCCGAGCTGGGTACTACATAATTTAATTCATATTTATTTATCCGTGATACCAAATCCATCTCAGTTTTGAAAAAGATTCTGAATGATTCTGAATTCACTATGAGAGATGACCAAAGATCAATATGTACGGAC

Fln Alignment:

Contig4125___HCVNVPPGEGIVREVKHAVKETLFPDDPFRQFKNQPRSRKCVLGLQYVFPILEWAPKYSRNLLKSDILSGITIASLAIPQGISYAKLANLPPVMGLYSSFVPPLIYAMLGSSKDLAVGTIAVVSLLLGSVIGDAVSPTEKPELYIGLAMTATFFAGVFQAALGIFRLGFIIDLLSHATIEGYMTGSAIIVSLQQLKGILGLEKFTKETDIISVITSATKQVHKWRWQSXXXXXXXXXXXXTARYISKRRKRLFWVSAAAPLTSVILGSLLVLATRADNHGVQIVGTLKKGLNPLSVGKLVFHGEYLRTSLKAGLIAGLISLAEGLAVGRTFALFKNYQIDGNKEMVAIGMMNVVGSCTSCYVSTGAFSRTAVNFNAGCKTAASNIVMAIAMMXXXXXXXXXXHYTPNAVLSAIIASAMLGLIDIHTAIHLWKVDKIDXXXXXXXXXXXXXXSVEIGLITAVSISLVRLLMHVMRPHTAVLGNIPGTCVYRSREQYPDAIRVQGILILRIDSPIFFANSSYLQERVIRWIEDEKEMHHQ----TLHYVILDMGPVTSIDTSGISAXXXXXXXXXXXXXXXVMANPGRQTIEKLNNSKFT-EILGKKWVFLTVDEAVVTCKTLLH
Q9SV13______________HTVEAPQPQPFLKSLQYSVKETLFPDDPFRQFKNQNASRKFVLGLKYFLPIFEWAPRYNLKFFKSDLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAVLGSSRDLAVGTVAVASLLTGAMLSKEVDAEKDPKLYLHLAFTATFFAGVLEASLGIFRLGFIVDFLSHATIVGFMGGAATVVSLQQLKGIFGLKHFTDSTDVISVMRSVFSQTHEWRWESGVLGCGFLFFLLSTRYFSIKKPKFFWVAAMAPLTSVILGSLLVYFTHAERHGVQVIGDLKKGLNPLSGSDLIFTSPYMSTAVKTGLITGIIALAEGVAVGRSFAMFKNYNIDGNKEMIAFGMMNIVGSFTSCYLTTGPFSRSAVNYNAGCKTAMSNIVMAIAVMFTLLFLTPLFHYTPLVVLSAIIISAMLGLIDYQAAIHLWKVDKFDFLVCMSAYVGVVFGSVEIGLVVAVAISIARLLLFVSRPKTAVKGNIPNSMIYRNTEQYPSSRTVPGILILEIDAPIYFANASYLRERIIRWIDEEEERVKQSGESSLQYIILDMSAVGNIDTSGISMMVEIKKVIDRRALKLVLSNPKGEVVKKLTRSKFIGDHLGKEWMFLTVGEAVEACSYMLH

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
312	75		25		0.996473
338	14		85		0.993533
407		16		83	0.994512
465		25		75	0.996473
737	33		66		0.997452
812			75	25	0.996473
860	33		66		0.997452
935		83		16	0.994512
1339	83			16	0.994512
1367	25	75			0.996473
1369			25	75	0.996473
1907		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain