SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4111

Length: 2386 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene4111
CGTCGTGACCTTGGCTGTCACTCAGTGAAGCTACCCTCTGATGGGGACAAGGTGTGGTGGCAGGAGTTTGATGTGAATCCACGACAGTTGGAAGAAGTCAGCAATCAAATGCTAGAACTTTATGAACAAAACAGAGTCATTCCTCCTTCACGGGGAAGTGAGCCTGATGGAAGTGTAGGCACCAGCAATCGTCAGAAGTCAGGTAACTCTCAGTTAAATAATGAAGATCATCCATCTGCAAATGGTCATGTGCAGCCTTCCTCTGGACCACCTCAAGCAGATGATGGGAACCATGTACTCAAGAGTGATGTCAGTGCTGATTGCCAAAACACAAGGACATATGTCACTAACATCTCTAATGCGAAGCAGAACATGGCAAGTTCCAATTCAGATATTGAACAAGGCTATAGTGAAAATCAAGGGTTTTCTGAGGGAAATGTAAACACCAATCAACCAAGTGGCTGTACTGTTACAAACACAAAGTTTTCAAGATGATATAAAATTTGATTTGGATCCATCTTCCAATGGCAGAGGCAGGGAAAAAGCTGATGAGGTGGCCATCTTAGCTAAGCTGAATAAAACAAAGCACTCTCTTGATGGTTTTGAAAGAAACGAGCCACTTGATTTGAGGAGGGATGTGAAAGGAGGGCAAGATGATGAAATACAGGAGAGTAAATCAGGGGATGAAATTAGAGGTGTAGGTCTTGATGAGATTAACAAGGACAAGGTGAAGGCAGCCTTGGAGAAAAGAAGAAAATCTCGTGGAGAGCTAACAGATTCAAGGCCTTCAATAAGGAAGATCGACATTATTGATGATGATGATCTTATTGAGAGAGAGCTGGAAAGTGGGGTAGAGGCTGCTGCTGAAGCGGAGAGGGCAAAGCAGGAGAGAAAAGATGCCTGGTCCAAATCTTTGTATAAAGTAGAGCAAGAAGGTGCAGTAGTCAGAAAAGATCGTCTAGATGATGGAGATAATGGAGGGAAGCGAAAAGGTCAATGTGTTTTGATCCACTTGATCCCGCTGGTCGAGATCAGGAGCAGGATCTTGTAGAATCTTCCTATGACCGAACAGAAGAAGGTGAGCTTCCAAATGCAATTATGCATGAACTGGGACACTCCCCAAGGCATGCTGAGAGGCGTTCTTTGATACCCACACAACTTGAAAAAGGAGAGAGTCCTGTTAATCGTCGTGATTATGGGAGTCGAGATCAACATGGATACAAGGATGGGTCCAGTGATACGAAACACAGACATGGTTACCATCAGCATCCACATTCTTCTTATCATCAACAGCATCAACATAGAGTTGATGCTGATAGGGATCGGCACCATTACAAGGAGCGAGAACATAAACGAGCTAGGCATGACCATGCAAAATGAAAGATGAGAGATAATTGACAACTCAGACATAGCTAGTCTTTGGGTGAGTATTATATTCTATGGGCATACCTTAATTTAAGGAGATCTGTGTTTTCCATTTTTCATTTCCATGCTTACCGCAAATAATGAAACGTGGAAGCTATGGATGTATAATTGAAGATGAAACTCTGCTTCACAACTATTTTGCATGTAAGCATTCTTGACGTTGTAGAGATGTTTGGCAGTAAATGCCTTTGATGAAATACATCTCATTTATCACATCCATACTTTTTTCTGATGGATCATTAAAGTCTCTGCACATTTCTTCATTTTGCTTCAAGAGATGCTTTAGTTAGGAATGCGTAGAAGCATGTGAAGCATTTGCCACCTTGTATACATTATGAGGGATATTACAAGTATAGTGCAACGCTGCCAATTCTTCTGTTTTGCATTCTCAGCAGGTTTTGTCAAAATTCATACAAGCATTTGGATCCTGAAGCATGTGAAGTTTGTTCATAATGGCCTTCGGCAGTTCCAATGTTTTTAGCGACAGAGGAACAACGTGGATTTGCCAACACCGTTCCTTGGATTTGCTAAAATGCAAACAAGCATTTGGATCCTGAAGGGTGTAAAGTTTGGTCAGAACGGCCTGAAGCAGTTTCAATGTTTTTGGCCAGAGAGGAACATCCATGGTATAGCCTTGATAAGACACTATTAGTAATTCAGTCATTTCACAACGTGACAATTTGCTGGAAAAGTTCTGCTGTTTGTATGTTGTCTGTGTTTTATATTCTTTTTTCTGTAGCATCTAGTGATTGGGGACATTAAGAATCCAGGTTTCTTTCCCTTTTCTGGGTCATATTTAGTTTCTCTCTAATGTCAAGGAGATCAATTTTCTGAACATTTATTTTAGTTAAGCTTAGAATTCCTTTCTGTTGGTGGATGATAAAAGATTGAATGTAGGTTCCTCAGTCCTTTCTGAGATGAGCATTAAATTTAACTTGTTTATAACTTGTGGACTTTGTTT

Ace file of the UniGene sp_v2.0_unigene4111 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cyclin-T1-3 n=3 Tax=Oryza sativa RepID=CCT13_ORYSJ	-	-	6.0e-20	51%
FL-Next	sp=Cyclin-T1-3; Oryza sativa subsp. japonica (Rice).	-	-	0.0	51%
Blast2go	cyclin family protein	-	-	1.11415e-21	64%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cyclin-dependent kinase.	EC:2.7.11.22	-	1.11415e-21	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of viral reproduction	GO:0050792	Biological Process	1.11415e-21	64%
Blast2go	regulation of cell cycle	GO:0051726	Biological Process	1.11415e-21	64%
Blast2go	leaf development	GO:0048366	Biological Process	1.11415e-21	64%
Blast2go	flower development	GO:0009908	Biological Process	1.11415e-21	64%
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	1.11415e-21	64%
Blast2go	response to virus	GO:0009615	Biological Process	1.11415e-21	64%
Blast2go	cyclin-dependent protein kinase activity	GO:0004693	Molecular Function	1.11415e-21	64%

Source	InterPros	Term	Type	Identity
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin C/H/T/L	IPR015429	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q2RAC5

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 89 aas, putative chimeric sequence, your sequence is shorter than subject: 165 - 490

Fln protein: RRDLGCHSVKLPSDGDKVWWQEFDVNPRQLEEVSNQMLELYEQNRVIPPSRGSEPDGSVGTSNRQKSGNSQLNNEDHPSANGHVQPSSGPPQADDGNHVLKSDVSADCQNTRTYVTNISNAKQNMASSNSDIEQGYSENQGFSEGNVNTNQPSGCTVTNTKFSR*

Protein Length: 166

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGAAGCTACCCTCTGATGGGGACAAGGTGTGGTGGCAGGAGTTTGATGTGAATCCACGACAGTTGGAAGAAGTCAGCAATCAAATGCTAGAACTTTATGAACAAAACAGAGTCATTCCTCCTTCACGGGGAAGTGAGCCTGATGGAAGTGTAGGCACCAGCAATCGTCAGAAGTCAGGTAACTCTCAGTTAAATAATGAAGATCATCCATCTGCAAATGGTCATGTGCAGCCTTCCTCTGGACCACCTCAAGCAGATGATGGGAACCATGTACTCAAGAGTGATGTCAGTGCTGATTGCCAAAACACAAGGACATATGTCACTAACATCTCTAATGCGAAGCAGAACATGGCAAGTTCCAATTCAGATATTGAACAAGGCTATAGTGAAAATCAAGGGTTTTCTGAGGGAAATGTAAACACCAATCAACCAAGTGGCTGTACTGTTACAAACACAAAGTTTTCAAGATGA___TATAAAATTTGATTTGGATCCATCTTCCAATGGCAGAGGCAGGGAAAAAGCTGATGAGGTGGCCATCTTAGCTAAGCTGAATAAAACAAAGCACTCTCTTGATGGTTTTGAAAGAAACGAGCCACTTGATTTGAGGAGGGATGTGAAAGGAGGGCAAGATGATGAAATACAGGAGAGTAAATCAGGGGATGAAATTAGAGGTGTAGGTCTTGATGAGATTAACAAGGACAAGGTGAAGGCAGCCTTGGAGAAAAGAAGAAAATCTCGTGGAGAGCTAACAGATTCAAGGCCTTCAATAAGGAAGATCGACATTATTGATGATGATGATCTTATTGAGAGAGAGCTGGAAAGTGGGGTAGAGGCTGCTGCTGAAGCGGAGAGGGCAAAGCAGGAGAGAAAAGATGCCTGGTCCAAATCTTTGTATAAAGTAGAGCAAGAAGGTGCAGTAGTCAGAAAAGATCGTCTAGATGATGGAGATAATGGAGGGAAGCGAAAAGGTCAATGTGTTTTGATCCACTTGATCCCGCTGGTCGAGATCAGGAGCAGGATCTTGTAGAATCTTCCTATGACCGAACAGAAGAAGGTGAGCTTCCAAATGCAATTATGCATGAACTGGGACACTCCCCAAGGCATGCTGAGAGGCGTTCTTTGATACCCACACAACTTGAAAAAGGAGAGAGTCCTGTTAATCGTCGTGATTATGGGAGTCGAGATCAACATGGATACAAGGATGGGTCCAGTGATACGAAACACAGACATGGTTACCATCAGCATCCACATTCTTCTTATCATCAACAGCATCAACATAGAGTTGATGCTGATAGGGATCGGCACCATTACAAGGAGCGAGAACATAAACGAGCTAGGCATGACCATGCAAAATGAAAGATGAGAGATAATTGACAACTCAGACATAGCTAGTCTTTGGGTGAGTATTATATTCTATGGGCATACCTTAATTTAAGGAGATCTGTGTTTTCCATTTTTCATTTCCATGCTTACCGCAAATAATGAAACGTGGAAGCTATGGATGTATAATTGAAGATGAAACTCTGCTTCACAACTATTTTGCATGTAAGCATTCTTGACGTTGTAGAGATGTTTGGCAGTAAATGCCTTTGATGAAATACATCTCATTTATCACATCCATACTTTTTTCTGATGGATCATTAAAGTCTCTGCACATTTCTTCATTTTGCTTCAAGAGATGCTTTAGTTAGGAATGCGTAGAAGCATGTGAAGCATTTGCCACCTTGTATACATTATGAGGGATATTACAAGTATAGTGCAACGCTGCCAATTCTTCTGTTTTGCATTCTCAGCAGGTTTTGTCAAAATTCATACAAGCATTTGGATCCTGAAGCATGTGAAGTTTGTTCATAATGGCCTTCGGCAGTTCCAATGTTTTTAGCGACAGAGGAACAACGTGGATTTGCCAACACCGTTCCTTGGATTTGCTAAAATGCAAACAAGCATTTGGATCCTGAAGGGTGTAAAGTTTGGTCAGAACGGCCTGAAGCAGTTTCAATGTTTTTGGCCAGAGAGGAACATCCATGGTATAGCCTTGATAAGACACTATTAGTAATTCAGTCATTTCACAACGTGACAATTTGCTGGAAAAGTTCTGCTGTTTGTATGTTGTCTGTGTTTTATATTCTTTTTTCTGTAGCATCTAGTGATTGGGGACATTAAGAATCCAGGTTTCTTTCCCTTTTCTGGGTCATATTTAGTTTCTCTCTAATGTCAAGGAGATCAATTTTCTGAACATTTATTTTAGTTAAGCTTAGAATTCCTTTCTGTTGGTGGATGATAAAAGATTGAATGTAGGTTCCTCAGTCCTTTCTGAGATGAGCATTAAATTTAACTTGTTTATAACTTGTGGACTTTGTTT

Fln Alignment:

Contig4111___VKLPSDGDKVWWQEFDVNPRQLEEVSNQMLELYEQNRVI-PPSRGSEPDG-SVGTSNRQKSGNSQLNNEDHPSANGHVQP--SSGP-PQADDGNHVLKSDVSADC-QNTRTYVTNISNAKQNMASS
Q2RAC5______________VKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRVAPPPSQGNDTEGSSASVVNQRASGKAPGSSEEPPTHENHLAPRQSSTPGHQGYDHPHPEKQNSSQRVPQNDARDGTANSNEGPNMSST

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
1718	10			90	0.90298
1720			30	70	1.0
1721	30	70			1.0
1722		70	30		1.0
1725	30			70	1.0
1726	70	30			1.0
1727	30			70	1.0
1728			30	70	1.0
1729		30		70	1.0
1732	30			70	1.0
1733		70	30		1.0
1734	70		30		1.0
1737	30			70	1.0
1738		30		70	1.0
1740	30	70			1.0
1742		70	30		1.0
1844	20	80			0.995493
1845	20			80	0.995493
1904	66		33		1.0
1908			33	66	1.0
1909	33			66	1.0
1913	40			60	1.0
1914		40		60	1.0
1915	40			60	1.0
1917		40		60	1.0
1918	60	40			1.0
1923			50	50	1.0
1924	50			50	1.0
1929		50	50		1.0
1932			50	50	1.0
2027	33		33	33	0.997753
2028	33	33	33		0.997753
2029	33			66	1.0
2030			33	66	0.997452
2121			84	15	0.999986
2122			15	84	0.999986
2123	15	84			0.999986
2128		15	84		0.999986
2129		15	84		0.999986
2138	75		25		1.0
2141		16		83	0.999991

SSRs (tot: 1)

Start position	End position	Sequence	Length
1564	1576	ATC ATC ATC ATC A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain