SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4100

Length: 1587 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene4100

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	homeobox protein HAT3.1 [Arabidopsis thaliana] sp\|Q04996.3\|HAT31_ARATH RecName: Full=Homeobox protein HAT3.1 dbj\|BAC41784.1\| putative homeobox protein HAT3.1 [Arabidopsis thaliana] gb\|AAO64900.1\| At3g19510 [Arabidopsis thaliana] gb\|AEE76250.1\| homeobox pr	-	-	61%
FL-Next	sp=Homeobox protein HAT3.1; Arabidopsis thaliana (Mouse-ear cress).	-	-	61%
Blast2go	homeobox protein	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of transcription, DNA-dependent	GO:0045893	Biological Process	73%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	73%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	73%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	HMG-I/HMG-Y, DNA-binding, conserved site	IPR000637	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3		IPR012287	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q04996

Fln msg: Distance to subject end: 275 aas, your sequence is shorter than subject: 447 - 723

Fln protein: MGRNRAQKATNGHKMNTEKVENSNQLSNLVNGDASLTSQTMRQSNNKISGSSSHHVALAKMNSRKSEIQESVSNAKENEPTANPVTGDNHVESEKPELDQKTGRCATKAGKSTSMVGKKYILRSLSSSVRVLRSRENKSPKDLPKTEGHSTEISAEQSKRRRKKHKKKTHVVQDELSRTRKRIKYLLLRIGFQQNMIDAYSNEGWKGQSQEKIRPEKELQKAASKILQCKLAIREAFHRLDSLCLEGSLPESDFDSEGQINSEDIFCAKCGSKELVLDNDIVLCDGACDRGFHQKCLEPPLETANIPPEGEGWLCPECDCKVDCFDLVNDHFGTTFEIGDSWEKVFAEAVVSADGDENPFDLEGMPSDDSEDDDYDPESPEKPDSNQQKKGSSSEEDDSTSDAENSTKSSSGDEGSESDDSSDVSSEDSQEHFREHLADSGKGKSKM

Protein Length: 448

Fln nts: ATGGGAGACCGCGCATTTGGCTGTCCTGGCCAACGTTGGCGGGCAGGCAAGGTCGTCTGCATACATTTCCACTATCTCGACTGAGCTCAACTCCAAGGCATTATCAAGCCGCCTCATCATCAATCGATCAATAACGGTGACACACTTCCTTCACTAAAATACCAAAGAATTGAGAGGGAATTGATTGCAGGTGAATATTGGACAGTTTTGAAGTAAATCCCAGTTACAACCTTTCATATATTAAAA_-_ATGGGAAGAAATAGGGCCCAGAAGGCTACTAATGGCCATAAGATGAATACAGAGAAAGTTGAGAACTCAAATCAACTATCTAATTTGGTGAATGGAGATGCCTCTCTGACATCACAAACTATGAGGCAGTCAAACAACAAAATCTCTGGTTCATCATCCCACCATGTGGCCCTGGCAAAGATGAATTCTCGGAAGTCTGAGATACAAGAAAGTGTGTCAAATGCAAAGGAAAATGAACCTACAGCAAACCCTGTAACTGGAGACAATCATGTTGAGTCAGAAAAGCCTGAATTGGACCAAAAGACTGGCAGGTGTGCTACCAAAGCTGGCAAGAGCACGTCAATGGTTGGGAAAAAGTACATATTGAGGTCATTGTCCAGTAGTGTTCGCGTTCTTAGATCAAGAGAAAATAAAAGCCCAAAGGATCTTCCTAAAACTGAAGGCCATTCTACGGAAATTAGTGCAGAGCAAAGCAAACGAAGGCGGAAAAAGCACAAGAAGAAAACACATGTTGTACAGGATGAGCTCTCTAGAACCAGAAAGCGAATAAAATATTTATTGCTTCGGATTGGTTTTCAGCAGAACATGATTGATGCTTATTCTAATGAAGGATGGAAAGGGCAAAGCCAAGAAAAGATTAGGCCAGAAAAGGAGCTTCAGAAGGCTGCATCAAAGATACTGCAGTGTAAGCTTGCAATTCGTGAAGCTTTCCATCGTCTTGATTCTTTGTGCTTGGAGGGGAGTCTTCCAGAATCTGACTTTGATTCCGAGGGGCAGATCAACAGCGAGGATATTTTCTGCGCAAAGTGTGGGTCAAAAGAATTGGTGCTTGATAATGATATCGTCCTTTGTGATGGTGCTTGTGATCGTGGCTTTCATCAGAAATGCCTGGAACCTCCTTTGGAAACTGCAAATATTCCTCCTGAAGGCGAGGGTTGGCTCTGCCCAGAGTGTGACTGCAAAGTTGACTGCTTTGATTTAGTCAATGATCACTTTGGAACAACTTTTGAAATTGGGGATAGCTGGGAGAAAGTTTTTGCTGAGGCAGTTGTGAGCGCAGATGGAGATGAGAACCCCTTTGATTTGGAAGGCATGCCATCTGATGATTCAGAAGATGATGATTATGACCCTGAAAGTCCAGAGAAGCCTGATAGTAACCAGCAGAAAAAGGGTTCAAGTTCTGAAGAGGATGACAGCACAAGTGATGCGGAAAATTCAACGAAATCAAGCAGTGGTGATGAAGGTTCTGAAAGTGATGACAGCTCTGATGTTTCCTCAGAAGACAGCCAGGAGCATTTCCGTGAGCACTTGGCAGATTCAGGAAAAGGAAAGTCCAAAATG

Fln Alignment:

Contig4100___DELSRTRKRIKYLLLRIGFQQNMIDAYSNEGWKGQSQEKIRPEKELQKAASKILQCKLAIREAFHRLDSLCLEGSLPESDFDSEGQINSEDIFCAKCGSKELVLDNDIVLCDGACDRGFHQKCLEPPLETANIPPEGEGWLCPECDCKVDCFDLVNDHFGTTFEIGDSWEKVFAEAVVSADGDENPFDLE
Q04996______________DEYTRIKKKLRYFLNRINYEQSLIDAYSLEGWKGSSLEKIRPEKELERATKEILRRKLKIRDLFQHLDTLCAEGSLPESLFDTDGEISSEDIFCAKCGSKDLSVDNDIILCDGFCDRGFHQYCLEPPLRKEDIPPDDEGWLCPGCDCKDDSLDLLNDSLGTKFSVSDSWEKIFPEAAAALVGGGQNLDCD

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
187	80		20		0.995493
273	40		60		1.0
306	80		20		0.995493
320	83		16		0.994512
356		20		80	0.995493
383	83			16	0.994512
384		80	20		0.995493
385	80		20		0.995493
386	80		20		0.995493
517		40		60	1.0
550	80		20		0.995493
587	85		14		0.993533
761	20		80		0.995493
762		20		80	0.995493
763	20			80	0.995493
764			80	20	0.995493
812	20	80			0.995493
814			20	80	0.995493
815		80	20		0.995493
1139		75		25	0.996473
1206	75		25		0.996473
1228	16			83	0.994512
1230			16	83	0.994512
1231	83		16		0.994512
1336	16		83		0.994512
1368	83	16			0.994512
1372			16	83	0.994512
1373	16			83	0.994512
1374	83	16			0.994512
1380	16	83			0.994512
1381	16			83	0.994512
1415	12		87		0.992554
1424		12		87	0.992554
1453	14			85	0.993533
1454		14	85		0.993533
1457			85	14	0.993533
1507	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain