SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4037

Length: 1380 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene4037

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	peroxidase 40 [Arabidopsis thaliana] dbj\|BAD43424.1\| unnamed protein product [Arabidopsis thaliana] dbj\|BAD43745.1\| unnamed protein product [Arabidopsis thaliana] gb\|AEE83724.1\| peroxidase 40 [Arabidopsis thaliana]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	peroxidase 40	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine metabolism	00360	73%
Blast2go	Methane metabolism	00680	73%
Blast2go	Phenylpropanoid biosynthesis	00940	73%
Blast2go	Biosynthesis of phenylpropanoids	01061	73%
Blast2go	Metabolic pathways	01100	73%
Blast2go	Biosynthesis of secondary metabolites	01110	73%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	73%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	73%
Blast2go	heme binding	GO:0020037	Molecular Function	73%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	73%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	GCN5-like 1	IPR009395	-	-
Sma3	Thymidylate kinase, conserved site	IPR018095	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP92

Fln msg:

Fln protein: MDRISNMAVVLRTSFVFMLISVGASTKTCLSGSLKPDYYAWTCPEADAIVFAGVEKAVIQEARMAASLLRLHFHDCFVNGCDASVLLDDTVTFVGEKTAVPNLNSLRGFEVIDAIKQELEFACPGTVSCADILAMAAQDSVVLTGGASWEVQLGRRDSLTASKTTANNNIPAPTSNVATLNSKFQNVGLTEQDMVTLSGAHTIGKARCATFNSRLTGQPDPTLQKEFLTSLQQICFQGLASNNNTVTSLDVETPVIFDNQYYQNLPSGEGLLNSDQVLYSTGGTTRELVEFYMQNQEAFFENFKTSMIKMGNIQPLTGTNGEIRRNCRFVNSLG*

Protein Length: 336

Fln nts: TATGGGGATCCATTGTTGTATAACCAACTGAAGAATTTCTGAGAGATCTAAGATTTTGATGTGATTTCTTGAC_-_ATGGACAGGATCTCTAACATGGCAGTCGTTCTGAGAACCAGCTTTGTTTTCATGTTGATTTCTGTAGGTGCAAGCACGAAAACATGCCTTAGTGGATCATTAAAGCCTGATTACTATGCATGGACTTGTCCAGAGGCTGATGCAATTGTTTTCGCTGGAGTTGAAAAGGCTGTGATTCAGGAGGCACGCATGGCTGCCTCTCTACTTCGTCTGCATTTTCATGATTGTTTTGTTAATGGCTGTGATGCTTCTGTGCTGCTGGATGACACGGTCACTTTTGTGGGAGAGAAGACAGCAGTTCCTAACCTCAATTCTCTCCGTGGTTTTGAAGTTATAGATGCCATTAAACAAGAACTTGAATTTGCATGCCCTGGAACTGTTTCCTGTGCTGACATCCTTGCAATGGCAGCCCAGGACTCGGTCGTTCTGACAGGAGGAGCATCATGGGAAGTACAATTGGGAAGAAGAGACAGCCTAACAGCAAGCAAAACAACAGCAAATAACAACATTCCAGCCCCCACATCAAATGTTGCAACACTCAACTCCAAGTTTCAGAATGTAGGCCTCACTGAACAAGACATGGTCACACTCTCAGGAGCCCATACAATAGGAAAGGCGCGTTGTGCAACATTCAACTCTAGGCTCACGGGACAACCGGATCCCACTCTTCAGAAAGAGTTTTTGACATCGCTCCAACAAATCTGCTTTCAAGGGCTAGCCAGTAATAACAACACCGTAACTTCACTAGATGTGGAGACTCCTGTCATTTTTGACAACCAATACTATCAAAACCTGCCTTCTGGTGAAGGCCTACTGAATTCGGACCAGGTGCTCTATTCCACTGGAGGAACGACAAGGGAGTTGGTGGAATTTTACATGCAGAACCAGGAGGCATTCTTCGAGAACTTCAAAACCTCCATGATCAAAATGGGAAACATCCAACCCCTCACGGGCACAAATGGGGAGATTCGTCGCAATTGTCGATTTGTTAATTCATTAGGATGA___AGCTACACATATGGCAAGCTATATATATAATAAATTTATATATACCACTATATCTTAGAGTGTCTTAGGTAAAAATTATGTTGAAAAGATTGCATGTGTGGTGAATTGTTGCAGTGTTATGTTGTATTCATGAACGTATATTATTATGTAGCTCAAGATAGGATTGCTATGGCAAATAGCATAGTGTATCATCCGACCTGGATGTAAGGTTGAATATTGAATACATATAAAAATGTAATGGAGAGACACCATAATGTATCACTCACTCGGATGTAAGGTTGAATATTGAATTTGTTGTTCAA

Fln Alignment:

Contig4037___MDRISNMAVVLRTSFVFMLISVGASTKTCLSGSLKPDYYAWTCPEADAIVFAGVEKAVIQEARMAASLLRLHFHDCFVNGCDASVLLDDTVTFVGEKTAVPNLNSLRGFEVIDAIKQELEFACPGTVSCADILAMAAQDSVVLTGGASWEVQLGRRDSLTASKTTANNNIPAPTSNVATLNSKFQNVGLTEQDMVTLSGAHTIGKARCATFNSRLTG-QPDPTLQKEFLTSLQQICFQGLASNNNTVTSLDVETPVIFDNQYYQNLPSGEGLLNSDQVLYSTG-GTTRELVEFYMQNQEAFFENFKTSMIKMGNIQPLTGTNGEIRRNCRFVN
A9NP92______________MQRCSTMAAALRLFFVLALMSAWVSTRASPHGSLRHDHHLWTCPEAEAIVFAGVQRAVAREARMAASLLRLHFHDCFVNGCDASVLLDDTSTFEGEKTAAPNLNSIRGFEVIDAIKEELEAACPENVSCADILAMAARDSVVITGGPSWEVLLGRRDSLTASKAAAESSLPAPTSDIKTLISKFKDVGLTQKDLVALSGAHTIGKARCATFSARLMGVQPDSTLQTEYLTSLQKLCSKGFVINNDTLADLDLETPEAFDNHYYANLRSGEGLLKTDQLLYSNGTETTKDWVEFYIQHQPTFFSNFKKSMIKMGNIELLTGTSGEIRRNCRSIN

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1193			10	50	1.0
1194	50		50		1.0
1195			50	50	1.0
1196			50	50	1.0
1211		50		50	1.0
1319	90			10	0.90298
1350	33	50		16	1.0
1351	16			83	0.994512
1355		40		60	1.0
1357	33		66		0.997452
1369		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain