SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4022

Length: 1298 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene4022 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	sequence-specific dna binding transcription factor	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	seed maturation	GO:0010431	Biological Process	72%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	72%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	72%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sugar transporter, conserved site	IPR005829	-	0.0	-
Sma3	MADF domain	IPR006578	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWZ6

Fln msg: your sequence is shorter than subject: 273 - 323

Fln protein: WGGLTLGLPAPNLPAASLAANAGAGGSREDCWSEGATNTLIDSWGERYLNLNRGNLKQKHWREVSETVNARAAGLKLRKTDVQCKNRLDTLKKKYKLEKTRISNGTIIGPSRWPFYVKLDNLIGPSRSKHQALKHLHHHPQPHPQLQPLPPPLPPPLPSKRPDGGLNSLSSGSLDATESLPSDGADEKGKRGRKSSSSSESPVRELAQAILKFGEIYERIENAKQQQIIELEKQRMEFTRDLEVQRMQLFMQTQIEVAKMEHAKNGGTEHYL*

Protein Length: 274

Fln nts: ATGGGGAGGCCTCACGCTGGGACTGCCGGCGCCCAATCTCCCGGCGGCGTCGCTGGCGGCCAACGCCGGTGCAGGAGGCAGCCGGGAGGACTGCTGGAGCGAGGGCGCCACCAATACACTGATCGATTCCTGGGGCGAGCGCTACCTCAACCTGAACAGGGGAAACCTCAAGCAGAAGCACTGGCGCGAGGTTTCTGAAACCGTCAATGCGCGCGCCGCTGGCCTTAAGCTTCGCAAAACCGATGTCCAGTGCAAGAACCGACTCGACACTCTGAAAAAGAAGTACAAGCTCGAGAAGACGAGGATCTCTAACGGCACCATCATTGGACCCTCCAGATGGCCCTTCTACGTCAAGCTTGACAACCTCATAGGACCCTCGCGGAGCAAGCACCAGGCCCTAAAGCATCTACATCACCATCCGCAACCGCATCCGCAGCTCCAGCCCCTGCCTCCGCCCCTGCCGCCTCCCCTGCCTTCTAAGCGTCCGGACGGGGGTTTAAATTCCCTGTCCTCCGGCTCCCTCGATGCTACTGAGAGCTTACCCAGTGACGGGGCTGACGAGAAGGGCAAGAGGGGGAGGAAGTCGTCGTCGTCCTCTGAGAGTCCCGTGAGAGAATTGGCGCAGGCGATTTTGAAGTTCGGAGAGATCTACGAGCGGATTGAGAACGCCAAGCAGCAGCAGATAATAGAATTGGAGAAGCAGCGCATGGAGTTTACAAGGGACTTGGAGGTGCAGAGGATGCAGCTCTTCATGCAGACGCAGATCGAGGTTGCCAAAATGGAGCACGCTAAAAATGGCGGTACAGAGCACTATTTGTAG___GCATGCTGTTCTGGTAGAAAAGTTTGTGCCATCAGAAATCTAGTGTAAACTTGAGACTGAATTATCCCACCAAAGAGAAGGTTGAAAATCTCTTCTACGTAGCAGAACACTTTGACAACAGATGTGTTTTTTTAGGGCAAGAAATTGTTGACTGGAATGGGCCTTGAAGGATGTTGTGGCTATTGAACAATCTTGGAGATTGAGGTCAGTTTTAAGACTTAAATCTAGCGAGGTTTTTAGTTTTCCAATCAATTGTTGTCTTCTCAATCATCAGAGAGCCTTGGAAATTGTAATACTATGGGCAGCCTTGCCTGGAAACTGGGCAAGCTTCTGCATTTCTTTCATGCTGTGTGATGCTCCATATTTTGCGTTTATGAGCTCCCAATGGTACTTTTTAGTACTGGGCTTAAGAAGAAGATATTGTAAACTTCGTTGTATCATAATTTATTATAACTAACCCATTTTTGACCCCCTTTAC

Fln Alignment:

Contig4022___REDCWSEGATNTLIDSWGERYLNLNRGNLKQKHWREVSETVNARAAGLKLRKTDVQCKNRLDTLKKKYKLEKTRISNGTIIGPSRWPFYVKLDNLIGPSRSKHQALKXXXXXXXXXXXXXXXXXXXXXXXPSKRPDXXXXXXXXXXLDATESLPS------DGADXXXXXXXXXXXXXXSPVRELAQAILKFGEIYERIENAKQQQIIELEKQRMEFTRDLEVQRMQLFMQTQIEVAKMEHAKNGGTEHYL
A9NWZ6______________RDDIWSQSATLTLIDAWGERYLELNRGNLKQKHWKEVAEAVNGRPGSNKQPKTDVQCKNRLDTLKKKYKVERSKIFAGS---TTKWPLFTKMDELIGPARKLHH----HHPQPLPLPPPPPMRPRRHPIESSPNP-----LNTATSPDMTESCLNGFNGNPSSAKRRKTVAVTVDNPDSSPLKELAGAILKFGEVYERTEVVKHQQMIDLEKHRMEFAKDLELQRMQLFVQTQLELAKIKHAKHGNTEHYL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1030	11			88	0.923564
1033	11	88			0.923564
1034		11	88		0.923564
1037		11		88	0.923564
1039	11		66	22	0.999999
1041			11	88	0.923564
1044	11			88	0.923564
1045		11		88	0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
705	716	GAC GAC GAC GAC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain