SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3982

Length: 521 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene3982
CAACGGGGCTTTTCCACCTGATAGGTCCATGGACAGGCAAAAGGCTTTAGAGGTAGCCATGAATGATATAAATAGCTGTTTTGGCAAGGGAAGTGTTACAAGACTGGGAAGTGCAGGTGGAGCTCTAGTAGAGACATTTCCGAGTGGCTGTCTTACTTTAGATCTGGCTTTAGGTGGTGGTCTACCCAAAGGACGAATCGTGGAGATATATGGTCCAGAGAGCAGTGGAAAGACCACTTTAGCACTCCATGCAATTGCAGAAATACAAAAATTGGGTGGCAATGCTATGCTTGTGGATGCTGAGCATGTTTTTGATCCATACTATTCAAAGGCATTGGGGGTGGATGTAGAAAGCCTAATTGTTTGCCAACCAGACAGTGGAGAGATGGCCTTAGAAACTGCTGATCGTATGTGCAGGTCTGGAGCTGTGGATCTGATTTGCATTGATTCTGTTGCTGCTTTGGCCCCCAGGGCTGAAATTGAAGGGGAAATAGGGACACAGCAAATTGGTCTACAACATT

Ace file of the UniGene sp_v2.0_unigene3982

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA repair protein recA homolog 1, chloroplastic n=3 Tax=Arabidopsis thaliana RepID=RECAC_ARATH	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	dna repair protein reca-like 1	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Calcium-transporting ATPase.	EC:3.6.3.8	-	0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	DNA recombination	GO:0006310	Biological Process	89%
Blast2go	DNA repair	GO:0006281	Biological Process	89%
Blast2go	SOS response	GO:0009432	Biological Process	89%
Blast2go	calcium-transporting ATPase activity	GO:0005388	Molecular Function	89%
Blast2go	damaged DNA binding	GO:0003684	Molecular Function	89%
Blast2go	ATP binding	GO:0005524	Molecular Function	89%
Blast2go	single-stranded DNA binding	GO:0003697	Molecular Function	89%
Blast2go	DNA-dependent ATPase activity	GO:0008094	Molecular Function	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3		IPR001553	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	DNA recombination and repair protein RecA	IPR013765	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRS8

Fln msg: Distance to subject end: 196 aas, your sequence is shorter than subject: 173 - 454

Fln protein: NGAFPPDRSMDRQKALEVAMNDINSCFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIYGPESSGKTTLALHAIAEIQKLGGNAMLVDAEHVFDPYYSKALGVDVESLIVCQPDSGEMALETADRMCRSGAVDLICIDSVAALAPRAEIEGEIGTQQIGLQH

Protein Length: 174

Fln nts: CAACGGGGCTTTTCCACCTGATAGGTCCATGGACAGGCAAAAGGCTTTAGAGGTAGCCATGAATGATATAAATAGCTGTTTTGGCAAGGGAAGTGTTACAAGACTGGGAAGTGCAGGTGGAGCTCTAGTAGAGACATTTCCGAGTGGCTGTCTTACTTTAGATCTGGCTTTAGGTGGTGGTCTACCCAAAGGACGAATCGTGGAGATATATGGTCCAGAGAGCAGTGGAAAGACCACTTTAGCACTCCATGCAATTGCAGAAATACAAAAATTGGGTGGCAATGCTATGCTTGTGGATGCTGAGCATGTTTTTGATCCATACTATTCAAAGGCATTGGGGGTGGATGTAGAAAGCCTAATTGTTTGCCAACCAGACAGTGGAGAGATGGCCTTAGAAACTGCTGATCGTATGTGCAGGTCTGGAGCTGTGGATCTGATTTGCATTGATTCTGTTGCTGCTTTGGCCCCCAGGGCTGAAATTGAAGGGGAAATAGGGACACAGCAAATTGGTCTACAACATT

Fln Alignment:

Contig3982___DRSMDRQKALEVAMNDINSCFGKGSVTRLGS-AGGALVETFPSGCLTLDLALG-GGLPKGRIVEIYGPESSGKTTLALHAIAEIQKLGGNAMLVDAEHVFDPYYSKALGVDVESLIVCQPDSGEMALETADRMCRSGAVDLICIDSVAALAPRAEIEGEIGTQQIGLQ
B8LRS8______________DKLSEKEAALQAALSQIGSTFGKETVMWLGRFLGRRNVPVISTGSLNLDVALGIGGFPKGRMVEIYGPEASGKTTLGLHTIAEAQRNGGYCVFIDAEHALDPSLAEAIGVKTENLLLAQPDCGEQALSLVDTFIRSGSVDVIVVDSVAALVPKSELEGEMGDAHMAVQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain