SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3948

Length: 1849 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3948 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FAD/NAD(P)-binding oxidoreductase [Arabidopsis thaliana] gb\|AAD39643.1\|AC007591_8 Contains a PF\|00175 Oxidoreductase FAD/NADH-binding domain. ESTs gb\|H76345 and gb\|AA651465 come from this gene [Arabidopsis thaliana] gb\|AAK06879.1\|AF344328_1 unknown protei	-	-	2.0e-11	29%
FL-Next	sp=Fruit protein pKIWI502; Actinidia deliciosa (Kiwi).	-	-	0.0	24%
Blast2go	protein	-	-	0.0	52%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	52%
Blast2go	catalytic activity	GO:0003824	Molecular Function	52%
Blast2go	chloroplast	GO:0009507	Cellular Component	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P43394

Fln msg: your sequence is longer than subject: 370 - 317

Fln protein: MEVAMRSTGALSISGTPTGVFSFSATTRFPAKLDPNFLPKFGYKLPRICHNRGPKSGGLLRSMCSVALKEAKLEETSFRLEIPQFKVIQVPPVPRSEFYTGSVLASEDVASGIRCIVIETEISRELVHRGDAYIKPGQLAQMRMKGGEVLRVPVSSAPFSKETNSSVLYKMRGDRPAGHVKAPNSTLSIKAPLHLHVTQSDFPLLYELKKGDEVEVGPFEPTGLDLRPVLFISGFPTMLFFASGRGIAVARAIIEAKEGDKGSLSLGFREEARLYYSAPDPTLIAYKGKFKEWEKKQVKIRTTVSSTAGEDWEGFVGSFTSLWDEDDIEYDPDTTAAVVCVEDDARTEMKELLSHAGIPEKQVIYWDAP*

Protein Length: 371

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGTTATCCTGCATTGCCAGGGCGAAGCGCTCAGACCAAGTCCTCATCTTCTATGAAACGCTATCTTTTCAAGTTCGTGAGTGGTTTTTACTCTATGCTATCTCTGCAACCAGAGAAGGGTTATATACTGCGAGTGCATCTGAATGTGTATATGTTACGTGGGCGGACGCATTTGACTCGGTAAATTCTATGTGGGTGGGTTAACGAGCAGAAGGGTTATTGGTTTAGTCTGGATCCATCCATGTCTGCAGACAACAATTACTGAAGTAGCCTATCGGAGGCTGATTTCTCTATTTCAGAAG_-_ATGGAAGTAGCCATGAGGAGTACTGGTGCTTTATCAATATCCGGGACACCTACAGGAGTTTTCTCATTCTCTGCGACCACTAGATTCCCTGCCAAATTAGATCCAAATTTTCTGCCCAAATTTGGATACAAACTTCCTCGTATTTGCCATAACCGTGGGCCTAAATCTGGCGGTCTTCTCAGATCAATGTGTTCAGTGGCATTGAAAGAAGCCAAGTTAGAGGAAACATCCTTTCGACTAGAAATTCCCCAATTCAAGGTAATTCAGGTTCCGCCAGTTCCAAGGTCGGAATTTTATACGGGCTCTGTTCTAGCCTCCGAAGATGTCGCTTCTGGAATTCGTTGCATTGTTATTGAAACAGAAATATCTAGAGAATTGGTGCATAGAGGCGATGCCTATATTAAGCCTGGGCAATTGGCACAAATGAGAATGAAAGGAGGAGAGGTCTTAAGAGTGCCAGTTAGCAGTGCCCCTTTTTCCAAGGAAACCAATTCCAGTGTGCTGTACAAGATGAGGGGAGATAGGCCTGCTGGCCACGTAAAGGCACCGAACTCGACACTCTCTATTAAAGCTCCTCTGCATCTCCACGTTACACAGTCCGATTTCCCTCTGCTCTACGAGCTTAAAAAAGGAGATGAAGTTGAAGTAGGACCTTTTGAGCCAACAGGACTTGATCTGCGGCCTGTCTTATTTATCTCTGGTTTTCCAACAATGCTTTTCTTTGCATCTGGGAGAGGCATTGCAGTTGCCCGTGCTATTATTGAAGCCAAGGAAGGAGATAAAGGGAGTCTTAGCTTGGGCTTTCGTGAAGAAGCGAGACTATATTATTCAGCTCCAGACCCAACTCTTATTGCATATAAGGGTAAGTTTAAAGAATGGGAGAAGAAGCAAGTAAAGATCCGCACTACAGTGTCCAGTACAGCCGGTGAAGACTGGGAAGGTTTTGTGGGTTCTTTCACATCTCTTTGGGATGAAGATGACATTGAATATGATCCAGATACAACAGCAGCTGTTGTTTGTGTTGAGGATGATGCAAGGACTGAAATGAAGGAATTACTGTCCCATGCCGGAATCCCAGAAAAACAAGTTATATATTGGGATGCACCATGA___GATGCACTGCAATACTTTGACAAGAATTCATATGTTGGATGGAACTTTCTTCTGTTGTAAATTGTGTTTGCCTTCCTGTGATTTAGAAAGAATCCTGGCCAGCGATGACATTCTAACATATCTGGATTAAGTGAGAGGTTTTAATAGTCAATGTTTTGGCGAAGAAGCTTTAGCTTCAACTTAGATTTACCCCTTAAATCCAAGTATACTTGAAATGTCTATTGAAATTCCAATGAGATTTTTTGGTATCTTATGTTGACTGATTTTACTTTTCACTAAGCGGAAAGGATGCATCTAATTTATCCGAAATTACTCATCCAATTGGAAAATGTTGAAATATCGGAAAATCCATATTCCTTTCAAGTAAAATCAAGTTAGCAGTCGCAGATTAAACTTTCTTGTATCCTTTGAAA

Fln Alignment:

Contig3948___IVIETEISRELVHRGDAYIKPGQLAQMRMKGGEVLRVP------VSSAPFSKETNSSVLYKMRGDRPAGHVKAPNSTLSIKAPLHLHVTQSDFPLLYELKKGDEVEVGPFEPTGLDLRPVLFISGFPTMLFFASGRGIAVARAIIEAKEGDKGSLSLGFREEARLYYSAPDPTLIAYKGKFKEWEKKQVKIRTTVSSTAGEDWEGFVGSFTSLWDEDDIEYDPDTTAAVVCVEDDARTEMKELLSHAGIPEKQVI
P43394______________VIVDLSRSPDLVYN---FVSPGQYVQIRIPEAIVNPPPRPAYFYIASPPSLVKKNLEFEFLIRS--------VPGTTSEV---------------LCSLKEGDVVDLTQIIGRGFDIEQILPPEDYPTVLISVTGYGMSAGRSFIE--EG----FGANKRSDVRLYYGAENLETMGYQERFKDWEASGVRV-IPVLSRPPPNWNGAVGYVQDVYLKDKPIADPRTTGAVLIGNPNMVEETRGILVAQGVSREKIL

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
1679	83			5	0.999887
1680		83	11	5	0.999887
1682		77	16	5	1.0
1683	83		5	11	0.999887
1684			11	88	0.999952
1685	11			88	0.999952
1690	11			88	0.999952
1692		88	11		0.999952
1693	88			11	0.999952
1695	11			88	0.999952
1698	11	88			0.999952
1699	88	11			0.999952
1743	93	6			0.99903
1789	12			87	0.992554
1792		12	87		0.992554
1793		12		87	0.992554
1794	12	87			0.992554
1795	12			87	0.992554
1796		12	87		0.992554
1797	75	12	12		0.975346
1798		12	75	12	0.975346
1799	12	87			0.992554
1800	12		75	12	0.975346
1802			14	85	0.993533
1803	14			85	0.993533
1805		20	80		0.995493
1809	25		25	50	0.995533
1810		25	50	25	0.995533
1811	33		66		0.997452
1812		75	25		0.996473
1813	66		33		0.997452
1816		33	66		0.997452
1818	75	25			0.996473
1819		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain