SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3942

Length: 2638 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene3942
CGTCGTGACCTTGGCTGTCACTCAATCTAATCTGATGGCGAAATCAGAGACATCAGAAGGAAGAATGAAATGCTTATCAGAGGGAGGTAGCTCAAAAATGTCATCAGGGGCAGAGATTTCTCAAGCAGCAGAAGAAGATAGCTCTGAAAAATCACCTTTTCAAAAAGTTTCTAGAGCAGACGGAGGTGTTTTGAATAAACAAATTAATGGAGCAGCTAGTTTGGCGACATATAATACACCTTTCCTGGCGAAAGACTTACAGGCAGAAAGTGCAATTCATGAAGTTGAAGCAGCTTCTATGAAACATTCATCAAGGGAAGCAGGCATTTCTCAGTCATTAAGAGCAGGTGCAGCAGGGAAATCTACCTTGAAAAAACCATTGAGGGTTGGTATTTCACGCGCACCTGAAGCTGGCACATCAGGAACAGTCACATTGAAACAAGCTTTACGAGGGTTGACCCTTGCTCAGGCTTCAGAATTAGCTTCTTTGAAACGCCATTCAAGACCACCAGGCAGTTCTCAGTTATCAGATGCAGGCGCTATAAAACAACTATACAGAGCTGTAGTCATTCCTGAGATATCAGAACCGAGCACTTCTAAAAACATATCCCGGGCATGGGGCACTTGCCAGGAGTTAGAAGGTGGCAGTCTAAAGCCATCACTGAGAGGTAGCAGTCATTTTGAAATGTCAGAAGCATGTCTGTTGAAGCTATCATCTGTATTTGGTACATCCCTTACTTCTGTAGCGAGTACATCAAAGACAAAAGGTGATAATTCTCAATCTGGGGAAGCTAGACCAGTGAGCTCATCAGAAGCTGGCACTAGCCAAAAGAATGAAGTGACACATGAACGTGGCAATGAAGATACAGGTGATGCTTCCTTGCCAGCCAGTGTTAGTCTTAGCTCTCAGAGCAGTGTCAACAACACTGATTTTGTCATTGAGGCAATTGGTAGTGAAAATTGTAATGGTGCTAAAATTAGCACAGGCAACAGCAGTGAGGGTAAATTTAGTGTAGTAAAGACTATGCAAGGTTTAAAAGCCAGTGACAGGGCCGATTATGTTGAAATTTCGAAGAGTAGTGCAAGCAGGGGTAGCAATAGCAGTGGGGTGAGTGATGAGAGCACTTGCAGTAGTTTAAGCAGCAGTGGCAACAGACCTCATATGTCAAATGATTCAAGGTGGGAAGCTATTCGTGCTGTTCGAAAGAGGGATGGATGTTTGGGGTTGAACCATTTCAGGTTGGTGAAGCGGTTAGGCTGTGGTGACATAGGCAGTGTGTACCTCACAGAATTGGATCGTACAAAGTGTTATTTTGCCATGAAGGTGATGGAAAATGGGCCTTCAGTGAGCCGGAAAAAGATGCTCAGAGCCCAGACTGAAAGAGAAATACTTCAGATGCTGGATCATCCATTTCTTCCCACATTATACACTCACTTTGAAACTGACAAGTTCTCATGTTTAGTTATGGAGTATTGCCCAGGAGGAGATCTCCACATACTCCGACAGCGGCAGCCAGGCAGAAACTTCTCAGAACAAGCAGCACGGTTTTATGCAGCAGAGGTTCTTCTGGCTTTGGAGTATCTACATATGCTTGGAATTGTGTACAGAGACCTCAAACCAGAAAATGTTCTCGTGAGGGAAGATGGCCACATGACCCTCGCAGACACTCATTTATCTTTGAGATGTGCTGTTAGCCCTACTCTAGTAAAATCGTCACCTGTTGATTTTGATCCTTTAAAAAGGATTCCAGCATTTTGCATTCAACCGCCTTGTATCCCACCTCCTTGTGTTGATCCAGTTTGTGTGCAGCAATCTTGCGTACAGCCTTCCTGCTTATTGCCCAGGTTCCTGTCACAGAGGTCAAAGAAGGTAAGGAAACCTAAAATTGAAGTTTGCCATCAAGTGACTCCTCTTACTGAGCTTGTTGCAGAGCCTACGAGTGCAAGGTCAAATTCATTTGTTGGAACACATGAATATTTGGCTCCCGAAATTGTTAAAGGCGAAGGTCATGGCAGTGCTGTTGATTGGTGGACCTACGGAATATTTTTATATGAGCTTCTGTTTGGAAAGACGCCATTCAAGGGGGCAGGTAATACTGCCACGCTTAACAATGTGGTAGGACAGCCCCTCAAGTTCCCAGAAACACCCGTTGTAAGCTATGCGGCCAAGGACTTGGTCAGGGGTTTGCTTGTAAAAGAGCCACAACATCGATTGGCATTCAAGCGTGGGGCAACGGAAATCAAACAACACCCTTTCTTTGAGGGTTTGAACTGGGCTCTTATTCGCTGTTCCACTCCACCTGAAGTTCCAAAGCCTTTGGAGACCACGTTTCCAGTGCAGGCATTGCCCACTGGTTCTACAAGTGGAAAGAAAATTGTTGGCACAGATTCCAATCTTACAAGGAATCATTTGGAATTTCAAGTATTTTAGCTTTTATGTAGTGAATGTATATACCTTATCCCAGAAGTCCAGGGTTACTTCGCAAAATATAGCATGCAGGTTGTTGGTGATGAACTATGTAATGATTAAATATGTATGAAAGAAGAAAGCAGTATCTTGCAATGTGAGGGAAACAACTGCTCTTGTATTCTGTGTAACTTTTACTCATTCAAGAAAATGCATTATAGTTTTATCATT

Ace file of the UniGene sp_v2.0_unigene3942

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9SWQ3_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	protein kinase g11a-like	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	77%
Blast2go	iron ion binding	GO:0005506	Molecular Function	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	77%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	77%

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Phytochrome	IPR001294	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Zinc finger, RanBP2-type	IPR001876	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	GAF domain	IPR003018	-	-
Sma3	Domain of unknown function DUF591	IPR007649	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Phytochrome, central region	IPR013515	-	-
Sma3	Phytochrome chromophore binding site	IPR013516	-	-
Sma3	PAS fold-2	IPR013654	-	-
Sma3	PAS fold-3	IPR013655	-	-
Sma3	PAS fold	IPR013767	-	-
Sma3	Phytochrome chromophore attachment domain	IPR016132	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKY3

Fln msg: your sequence is longer than subject: 799 - 545

Fln protein: MAKSETSEGRMKCLSEGGSSKMSSGAEISQAAEEDSSEKSPFQKVSRADGGVLNKQINGAASLATYNTPFLAKDLQAESAIHEVEAASMKHSSREAGISQSLRAGAAGKSTLKKPLRVGISRAPEAGTSGTVTLKQALRGLTLAQASELASLKRHSRPPGSSQLSDAGAIKQLYRAVVIPEISEPSTSKNISRAWGTCQELEGGSLKPSLRGSSHFEMSEACLLKLSSVFGTSLTSVASTSKTKGDNSQSGEARPVSSSEAGTSQKNEVTHERGNEDTGDASLPASVSLSSQSSVNNTDFVIEAIGSENCNGAKISTGNSSEGKFSVVKTMQGLKASDRADYVEISKSSASRGSNSSGVSDESTCSSLSSSGNRPHMSNDSRWEAIRAVRKRDGCLGLNHFRLVKRLGCGDIGSVYLTELDRTKCYFAMKVMENGPSVSRKKMLRAQTEREILQMLDHPFLPTLYTHFETDKFSCLVMEYCPGGDLHILRQRQPGRNFSEQAARFYAAEVLLALEYLHMLGIVYRDLKPENVLVREDGHMTLADTHLSLRCAVSPTLVKSSPVDFDPLKRIPAFCIQPPCIPPPCVDPVCVQQSCVQPSCLLPRFLSQRSKKVRKPKIEVCHQVTPLTELVAEPTSARSNSFVGTHEYLAPEIVKGEGHGSAVDWWTYGIFLYELLFGKTPFKGAGNTATLNNVVGQPLKFPETPVVSYAAKDLVRGLLVKEPQHRLAFKRGATEIKQHPFFEGLNWALIRCSTPPEVPKPLETTFPVQALPTGSTSGKKIVGTDSNLTRNHLEFQVF*

Protein Length: 800

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTAATCTG_-_ATGGCGAAATCAGAGACATCAGAAGGAAGAATGAAATGCTTATCAGAGGGAGGTAGCTCAAAAATGTCATCAGGGGCAGAGATTTCTCAAGCAGCAGAAGAAGATAGCTCTGAAAAATCACCTTTTCAAAAAGTTTCTAGAGCAGACGGAGGTGTTTTGAATAAACAAATTAATGGAGCAGCTAGTTTGGCGACATATAATACACCTTTCCTGGCGAAAGACTTACAGGCAGAAAGTGCAATTCATGAAGTTGAAGCAGCTTCTATGAAACATTCATCAAGGGAAGCAGGCATTTCTCAGTCATTAAGAGCAGGTGCAGCAGGGAAATCTACCTTGAAAAAACCATTGAGGGTTGGTATTTCACGCGCACCTGAAGCTGGCACATCAGGAACAGTCACATTGAAACAAGCTTTACGAGGGTTGACCCTTGCTCAGGCTTCAGAATTAGCTTCTTTGAAACGCCATTCAAGACCACCAGGCAGTTCTCAGTTATCAGATGCAGGCGCTATAAAACAACTATACAGAGCTGTAGTCATTCCTGAGATATCAGAACCGAGCACTTCTAAAAACATATCCCGGGCATGGGGCACTTGCCAGGAGTTAGAAGGTGGCAGTCTAAAGCCATCACTGAGAGGTAGCAGTCATTTTGAAATGTCAGAAGCATGTCTGTTGAAGCTATCATCTGTATTTGGTACATCCCTTACTTCTGTAGCGAGTACATCAAAGACAAAAGGTGATAATTCTCAATCTGGGGAAGCTAGACCAGTGAGCTCATCAGAAGCTGGCACTAGCCAAAAGAATGAAGTGACACATGAACGTGGCAATGAAGATACAGGTGATGCTTCCTTGCCAGCCAGTGTTAGTCTTAGCTCTCAGAGCAGTGTCAACAACACTGATTTTGTCATTGAGGCAATTGGTAGTGAAAATTGTAATGGTGCTAAAATTAGCACAGGCAACAGCAGTGAGGGTAAATTTAGTGTAGTAAAGACTATGCAAGGTTTAAAAGCCAGTGACAGGGCCGATTATGTTGAAATTTCGAAGAGTAGTGCAAGCAGGGGTAGCAATAGCAGTGGGGTGAGTGATGAGAGCACTTGCAGTAGTTTAAGCAGCAGTGGCAACAGACCTCATATGTCAAATGATTCAAGGTGGGAAGCTATTCGTGCTGTTCGAAAGAGGGATGGATGTTTGGGGTTGAACCATTTCAGGTTGGTGAAGCGGTTAGGCTGTGGTGACATAGGCAGTGTGTACCTCACAGAATTGGATCGTACAAAGTGTTATTTTGCCATGAAGGTGATGGAAAATGGGCCTTCAGTGAGCCGGAAAAAGATGCTCAGAGCCCAGACTGAAAGAGAAATACTTCAGATGCTGGATCATCCATTTCTTCCCACATTATACACTCACTTTGAAACTGACAAGTTCTCATGTTTAGTTATGGAGTATTGCCCAGGAGGAGATCTCCACATACTCCGACAGCGGCAGCCAGGCAGAAACTTCTCAGAACAAGCAGCACGGTTTTATGCAGCAGAGGTTCTTCTGGCTTTGGAGTATCTACATATGCTTGGAATTGTGTACAGAGACCTCAAACCAGAAAATGTTCTCGTGAGGGAAGATGGCCACATGACCCTCGCAGACACTCATTTATCTTTGAGATGTGCTGTTAGCCCTACTCTAGTAAAATCGTCACCTGTTGATTTTGATCCTTTAAAAAGGATTCCAGCATTTTGCATTCAACCGCCTTGTATCCCACCTCCTTGTGTTGATCCAGTTTGTGTGCAGCAATCTTGCGTACAGCCTTCCTGCTTATTGCCCAGGTTCCTGTCACAGAGGTCAAAGAAGGTAAGGAAACCTAAAATTGAAGTTTGCCATCAAGTGACTCCTCTTACTGAGCTTGTTGCAGAGCCTACGAGTGCAAGGTCAAATTCATTTGTTGGAACACATGAATATTTGGCTCCCGAAATTGTTAAAGGCGAAGGTCATGGCAGTGCTGTTGATTGGTGGACCTACGGAATATTTTTATATGAGCTTCTGTTTGGAAAGACGCCATTCAAGGGGGCAGGTAATACTGCCACGCTTAACAATGTGGTAGGACAGCCCCTCAAGTTCCCAGAAACACCCGTTGTAAGCTATGCGGCCAAGGACTTGGTCAGGGGTTTGCTTGTAAAAGAGCCACAACATCGATTGGCATTCAAGCGTGGGGCAACGGAAATCAAACAACACCCTTTCTTTGAGGGTTTGAACTGGGCTCTTATTCGCTGTTCCACTCCACCTGAAGTTCCAAAGCCTTTGGAGACCACGTTTCCAGTGCAGGCATTGCCCACTGGTTCTACAAGTGGAAAGAAAATTGTTGGCACAGATTCCAATCTTACAAGGAATCATTTGGAATTTCAAGTATTTTAG___CTTTTATGTAGTGAATGTATATACCTTATCCCAGAAGTCCAGGGTTACTTCGCAAAATATAGCATGCAGGTTGTTGGTGATGAACTATGTAATGATTAAATATGTATGAAAGAAGAAAGCAGTATCTTGCAATGTGAGGGAAACAACTGCTCTTGTATTCTGTGTAACTTTTACTCATTCAAGAAAATGCATTATAGTTTTATCATT

Fln Alignment:

Contig3942___NRPHMSNDSRWEAIRAVRKRDGCLGLNHFRLVKRLGCGDIGSVYLTELDRTKCYFAMKVMENGPSVSRKKMLRAQTEREILQMLDHPFLPTLYTHFETDKFSCLVMEYCPGGDLHILRQRQPGRNFSEQAARFXXXXXXXXXXXXHMLGIVYRDLKPENVLVREDGHMTLADTHLSLRCAVSPTLVKSSPVDFDPLKRIPAFXXXXXXXXXXXXXXXXXXXXXXXXXXLLPRFLSQRSKKVRKPKIEVCHQVTPLTELVAEPTSARSNSFVGTHEYLAPEIVKGEGHGSAVDWWTYGIFLYELLFGKTPFKGAGNTATLNNVVGQPLKFPETPVVSYAAKDLVRGLLVKEPQHRLAFKRGATEIKQHPFFEGLNWALIRCSTPPEVPKPLETTFPVQALPTGSTSG-KKIVGTDSN
B8LKY3______________NKPHKGNDPRWDAIQAVKVRDGFLGLSHFRLLKRVGSGDIGSVYLAELRGTNCFFAMKVMDKGSLENRNKSLRAQTEREILSCLDHPFLPTLYSHFETDKFSCLVMEFCSGGDLHSFRQQQPWKRFSESASRFYAAEILLALEYLHMMGIVYRDLKPENVLVRGDGHIMLLDFDLSLRCVVSPTLVKSASPGLDPSRRVPVY-----CVQPSCIEPSCVTPVCLQPSCFRPRFLPQRSKKIRKPKNEMANQSNLLPELIAEPTSARSMSFVGTHEYLAPEIIKGQGHGSAVDWWTFGIFLYELLYGTTPFKGAGNRETLEKIAGQALRFPDSPTVSFAARDLIRGLLMKDPQHRLAFKRGATEIKQHPFFDGANWALIRSTTPPQIPKPIDLSFLTNKVTPPSARGEKKKVDSDAN

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
489		25		75	1.0
692	80	20			0.995493
728	16			83	0.994512
730		83		16	0.994512
731	83		16		0.994512
1040	83	16			0.994512
1041	83			16	0.994512
1042	66			16	0.988813
1044		66		33	1.0
1047		16	83		0.994512
1049		16	83		0.994512
1485			83	16	0.994512
1486			83	16	0.994512
1504	20			80	0.995493
1506	20	80			0.995493
1507			80	20	0.995493
1508	80			20	0.995493
1874	87		12		0.992554
1978		50		50	1.0
2011	87		12		0.992554
2224	85		14		0.993533
2245	88		11		0.923564
2246	88		11		0.923564
2247			11	88	0.923564
2249	90	10			0.90298
2250	90		10		0.90298
2251	90			10	0.90298
2253	90		10		0.90298
2254	90			10	0.90298
2255		90	10		0.90298
2259		90		10	0.90298
2261			10	90	0.90298
2262			10	90	0.90298
2265			10	90	0.90298
2267		10	90		0.90298
2269		10	90		0.90298
2270			90	10	0.90298
2271		10	90		0.90298
2556	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain