SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3938

Length: 958 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene3938

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	High-affinity nitrate transport system component n=1 Tax=Cucumis sativus RepID=C8CHG8_CUCSA	-	-	1.99993e-41	45%
FL-Next	sp=High-affinity nitrate transporter 3.1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	52%
Blast2go	nitrate transmembrane transporter	-	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	66%
Blast2go	nitrate transport	GO:0015706	Biological Process	66%
Blast2go	response to nitrate	GO:0010167	Biological Process	66%
Blast2go	nitrate transmembrane transporter activity	GO:0015112	Molecular Function	66%
Blast2go	plasma membrane	GO:0005886	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Fibronectin, type III	IPR003961	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Transporter, high affinity nitrate, Nar2	IPR016605	-	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
116	25	75			0.996473
314	83		16		0.994512
403	20	80			0.995493
404			80	20	0.995493
453		85		14	0.993533
454		85	14		0.993533
547		12		87	0.992554
727	90		10		0.90298
734		11	88		0.923564
736		88		11	0.923564
737		88		11	0.923564
826	14	85			0.993533
829	14			85	0.993533
832			16	83	0.994512
834		16	83		0.994512
877			66	33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain