SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3931

Length: 2095 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene3931
CGTCGTGACCTTGGCCGTCGTGACCTTGGCTGTGAAACTTATTCAACAATTACAAGAACAGAGTCAAAAGCCTGCCAATACTGACGATGGGTCAGTGTCAGGGAGAGTATTCAGGAAAGTGGATCTGGAAGAGCCCATAAGATATGCTGCTGGTGATCCTATTGAATCTTGGCTCCACAAATTGCTATGTTTAGATGCTGCAAATTATATTCCAAACATCGATGGCAGGCTTCCGCACCCAAGTGAATGCCAGCTTTACTATGTCAACCGTGACACTCTTTTTTCTATCACAAAGCCAGTGAAGTCTTTTTGCAGCGTATGATAGCACTTTATGTAGCTTCCCACTATAAAATTCTCCAAATGATTTGCAGTTAATGTCAGATGCTCCTGCACATCACCTTTTTGTGCTTCTTGGTCCAGTCGATGAGACAGAAAATCGTCTACCAGATATACTATGTGTTATTCAGGTTTGCTTAGAGGGACAAATATCAAAGGATTCAGTGTTAAAAAGTCTGAGTGATGGGTATCAACCTTCTGGAGATCAAATACCATGGAAGGTTTCAGAGCAGTTCCAGGATATGAATTTCCCAAGTCTTTCAGGGGCTCGAATTGTTCGTATAGCTGTTCATCCAAATGTCATTAGGGCTGGCTATGGATCAATTGCTGTGGATCTGCTCACAAGGTATTATGAAGGACAGTTGACAGATCTTACTGAGGTAGATGCTGAAGAGGAAGAGAAAAAGGAACGTGGAAAGATCACAGAAGCTGCAGTAAAGCTTTCTTTACAAGAAGAACAAGTCAGGCCCCGTTCTGATCTTCCTCCTTTACTTGTTGGCCTTCATGAGCGACGCCCTGAGAAGCTGCATTATATTGGAGTTTCGTTTGGGCTTACTCAGCATCTATATAATTTCTGGAGAAAGCACCACATGGTTCCTTTTTATATTAGTCAGATCCCGAGTGCCGTCACTGGGGAGCATGCTTGTATGATGTTGAAACCTTTAGACAATGATGAAATTGATTCAAAAGGAAAGGGTCCGGGTGGGTTCTTTGAGCCATTTTATCAAGATTTTCGACGTAGGTTCATGCGACTTCTGGGCTCCAGCTTCAGGCCTCTTTCCCCTGCACTTGCTTTGAGTATAATAGATCCAAAGATAAGTTTTTCGGAACAAGAAACACAAGGAGGAGCAACCATGGAGAGCATATTTGGAGGTAAAAGGTCAGTGCTAAGCCCATATGACATGAAGCGCATGGAATCTTACACAAACAATCTTGCGGATTACCATCTGATTCTAGATCTTGTTCCTTCTCTTGCTCATCTATATTTTGAGGAGAGATTACCGGCTTCATTGTCCTATAGTCAAGCTGCAATTTTGCTGGCTATGGGTTTGCAGAATCATGACATTGGTCATGTGGAGGCCCAGCTGAAGCAGTTGGGTAGACAGCAGATCTTAGCGTTATTCAGTAAAATTATGAAAAAACTGTATGGGCAATTGCATAGAGCTGCAGCCAAGGAGGTGGAATTAGCCTTACCACGTTTGCAAGAGGTGGCAATGCATCCTCACATTATATCAGTAGATGAGGATCTTAACAATGCTGCCAAAGAAGTGAAGGACAAAATGAATGAAAGCTTTAAAGATACGTTGAATCCTGAGCTGCTTCAACAGTATGCTATACTGGGCAGAGAGGCTGACTTTGAGGAGGCACTACAAAATGGTGATGGAAAGATATCCAAGAGTGGTCTAATCAGTGTAAAAGCCGGAGTTAAGGAGAGATCTGTAGGCAAAGACGAAGAAGATATGAAGCACAGTAAAAGAAAAGGAAATAATAGAGGAGATATGCGGCCAAAGAAGAAGAAATCAAGAACATGAACGTGTAATTTTGCCAATGATGTTAGTGGGCTTATGAAATTTCAGTGTCGTACTTTGTATTTTCTTGATCCAGATTCTCCACAGAATTATTGACAAAGATGAGAAAACTATAATGGAATGATATTGGGATTCTCTCTCTAATCAACATTTAACATATCGATCTATACCTCATTGAGATTCAACGTGCATTACTTCACTTTTCATTGAATTGTTGGAAATTGTAATGT

Ace file of the UniGene sp_v2.0_unigene3931 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	[R] COG1444 Predicted P-loop ATPase fused to an acetyltransferase	-	-	39%
FL-Next	sp=UPF0202 protein At1g10490; Arabidopsis thaliana (Mouse-ear cress).	-	-	59%
Blast2go	upf0202 protein at1g10490-like	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3	Helicase domain	IPR007807	-	-
Sma3	Domain of unknown function DUF1726	IPR013562	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9XIK4

Fln msg: Separated hits, possible frame ERROR between 310 and 351, your sequence is shorter than subject: 623 - 1028

Fln protein: VVTLAVVTLAVKLIQQLQEQSQKPANTDDGSVSGRVFRKVDLEEPIRYAAGDPIESWLHKLLCLDAANYIPNIDGRLPHPSECQLYYVNRDTLFSITKPVKSxxxxxxxxxxxxxxxNSPNDLQLMSDAPAHHLFVLLGPVDETENRLPDILCVIQVCLEGQISKDSVLKSLSDGYQPSGDQIPWKVSEQFQDMNFPSLSGARIVRIAVHPNVIRAGYGSIAVDLLTRYYEGQLTDLTEVDAEEEEKKERGKITEAAVKLSLQEEQVRPRSDLPPLLVGLHERRPEKLHYIGVSFGLTQHLYNFWRKHHMVPFYISQIPSAVTGEHACMMLKPLDNDEIDSKGKGPGGFFEPFYQDFRRRFMRLLGSSFRPLSPALALSIIDPKISFSEQETQGGATMESIFGGKRSVLSPYDMKRMESYTNNLADYHLILDLVPSLAHLYFEERLPASLSYSQAAILLAMGLQNHDIGHVEAQLKQLGRQQILALFSKIMKKLYGQLHRAAAKEVELALPRLQEVAMHPHIISVDEDLNNAAKEVKDKMNESFKDTLNPELLQQYAILGREADFEEALQNGDGKISKSGLISVKAGVKERSVGKDEEDMKHSKRKGNNRGDMRPKKKKSRT*

Protein Length: 624

Fln nts: CGTCGTGACCTTGGCCGTCGTGACCTTGGCTGTGAAACTTATTCAACAATTACAAGAACAGAGTCAAAAGCCTGCCAATACTGACGATGGGTCAGTGTCAGGGAGAGTATTCAGGAAAGTGGATCTGGAAGAGCCCATAAGATATGCTGCTGGTGATCCTATTGAATCTTGGCTCCACAAATTGCTATGTTTAGATGCTGCAAATTATATTCCAAACATCGATGGCAGGCTTCCGCACCCAAGTGAATGCCAGCTTTACTATGTCAACCGTGACACTCTTTTTTCTATCACAAAGCCAGTGAAGTCTTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAATTCTCCAAATGATTTGCAGTTAATGTCAGATGCTCCTGCACATCACCTTTTTGTGCTTCTTGGTCCAGTCGATGAGACAGAAAATCGTCTACCAGATATACTATGTGTTATTCAGGTTTGCTTAGAGGGACAAATATCAAAGGATTCAGTGTTAAAAAGTCTGAGTGATGGGTATCAACCTTCTGGAGATCAAATACCATGGAAGGTTTCAGAGCAGTTCCAGGATATGAATTTCCCAAGTCTTTCAGGGGCTCGAATTGTTCGTATAGCTGTTCATCCAAATGTCATTAGGGCTGGCTATGGATCAATTGCTGTGGATCTGCTCACAAGGTATTATGAAGGACAGTTGACAGATCTTACTGAGGTAGATGCTGAAGAGGAAGAGAAAAAGGAACGTGGAAAGATCACAGAAGCTGCAGTAAAGCTTTCTTTACAAGAAGAACAAGTCAGGCCCCGTTCTGATCTTCCTCCTTTACTTGTTGGCCTTCATGAGCGACGCCCTGAGAAGCTGCATTATATTGGAGTTTCGTTTGGGCTTACTCAGCATCTATATAATTTCTGGAGAAAGCACCACATGGTTCCTTTTTATATTAGTCAGATCCCGAGTGCCGTCACTGGGGAGCATGCTTGTATGATGTTGAAACCTTTAGACAATGATGAAATTGATTCAAAAGGAAAGGGTCCGGGTGGGTTCTTTGAGCCATTTTATCAAGATTTTCGACGTAGGTTCATGCGACTTCTGGGCTCCAGCTTCAGGCCTCTTTCCCCTGCACTTGCTTTGAGTATAATAGATCCAAAGATAAGTTTTTCGGAACAAGAAACACAAGGAGGAGCAACCATGGAGAGCATATTTGGAGGTAAAAGGTCAGTGCTAAGCCCATATGACATGAAGCGCATGGAATCTTACACAAACAATCTTGCGGATTACCATCTGATTCTAGATCTTGTTCCTTCTCTTGCTCATCTATATTTTGAGGAGAGATTACCGGCTTCATTGTCCTATAGTCAAGCTGCAATTTTGCTGGCTATGGGTTTGCAGAATCATGACATTGGTCATGTGGAGGCCCAGCTGAAGCAGTTGGGTAGACAGCAGATCTTAGCGTTATTCAGTAAAATTATGAAAAAACTGTATGGGCAATTGCATAGAGCTGCAGCCAAGGAGGTGGAATTAGCCTTACCACGTTTGCAAGAGGTGGCAATGCATCCTCACATTATATCAGTAGATGAGGATCTTAACAATGCTGCCAAAGAAGTGAAGGACAAAATGAATGAAAGCTTTAAAGATACGTTGAATCCTGAGCTGCTTCAACAGTATGCTATACTGGGCAGAGAGGCTGACTTTGAGGAGGCACTACAAAATGGTGATGGAAAGATATCCAAGAGTGGTCTAATCAGTGTAAAAGCCGGAGTTAAGGAGAGATCTGTAGGCAAAGACGAAGAAGATATGAAGCACAGTAAAAGAAAAGGAAATAATAGAGGAGATATGCGGCCAAAGAAGAAGAAATCAAGAACATGAACGTGTAATTTTGCCAATGATGTTAGTGGGCTTATGAAATTTCAGTGTCGTACTTTGTATTTTCTTGATCCAGATTCTCCACAGAATTATTGACAAAGATGAGAAAACTATAATGGAATGATATTGGGATTCTCTCTCTAATCAACATTTAACATATCGATCTATACCTCATTGAGATTCAACGTGCATTACTTCACTTTTCATTGAATTGTTGGAAATTGTAATGT

Fln Alignment:

Contig3931___KLIQQLQEQSQKPANTDDGSVSGRVFRKVDLEEPIRYAAGDPIESWLHKLLCLDAANYIPNIDGRLPHPSECQLYYVNRDTLFSITKPVKSFxxxxxxxxxxxxxxNSPNDLQLMSDAPAHHLFVLLGPVDETENRLPDILCVIQVCLEGQISKDSVLKSLSDGYQPSGDQIPWKVSEQFQDMNFPSLSGARIVRIAVHPNVIRAGYGSIAVDLLTRYYEGQLTDLTEVDAXXXXXXERGKITEAAVKLSLQEEQVRPRSDLPPLLVGLHERRPEKLHYIGVSFGLTQHLYNFWRKHHMVPFYISQIPSAVTGEHACMMLKP--LDNDEIDSXXXXXXXXXXXFYQDFRRRFMRLLGSSFRPLSPALALSIIDPKISFSEQETQGGATMESIFGGKRSVLSPYDMKRMESYTNNLADYHLILDLVPSLAHLYFEERLPASLSYSQAAILLAMGLQNHDIGHVEAQLKQLGRQQILALFSKIMKKLYGQLHRAAAKEVELALPRLQEVAMHPHIISVDEDLNNAAKEVKDKMNESFKDTLNPELLQQYAILGREADFEEALQNGDGKISKSGLISVKAGVKERSVGKDEEDMKHSKRKGNNRGDMRPKKKK
Q9XIK4______________KLLQQLEEQSRAPVTGVEGSLSGCLFKKIELSESIRYASGDPIESWLNGLLCLDVANCLPN-PACHPLPSQCDLYYVNRDTLFSYHKDSELFxxxxxxxxxxxxxxNSPNDLQLLSDAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRKSAEKSLREGHSPHGDQIPWKFCEQFRDVVFPKLSGARIVRIAVHPNAMKMGYGSAAVELLTRYFEGQLASISEGDDELEVEPSPVRVTEAAAKVSLLEEQIKPRANLPPLLVPLRDRRPERLHYIGVSFGLTLDLFRFWRKHKFAPFYISQIPSAVTGEHTCMLLKPLTLSNDEFEVDESDELGFFAPFYKDFRIRFSKLLSDKFKKMDYKLAMSVLNPKINFPEVDLTGNSP-DGFLKKLDGVLSPYDMERFRAYTANLVDFNLVYDICKTLAHHYFQEKLPVSLSYVQASVLLCLGLQESDFSSIERQM-QLERGQIYSLLLKVGKKLYKYLNGIATKELESTLPRLKDRVLEPHKVSVDEDLREGAKEVEEQMRARIEELLDPELLDQFAIGDKEA---EALQK--SKISSSGLISIESTKTDNKKEKPSGFDKSAKKRGNDKHSSTSNKKR

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
758	11		88		0.923564
759			88	11	0.923564
765		12		87	0.992554
786		87		12	0.992554
787	87		12		0.992554
789		12	87		0.992554
796	87			12	0.992554
800	87	12			0.992554
803		11		88	0.923564
804		88	11		0.923564
928		12		87	0.992554
929		12		87	0.992554
930		12	87		0.992554
931	12			87	0.992554
960	16			16	0.988813
961	16			83	0.994512
1011		75		25	0.996473
1115	80			20	0.995493
1647		33		66	0.997452
1932		87		12	0.992554
1970	11		88		0.923564
1971	11	88			0.923564
1973		88	11		0.923564
1985		88		11	0.923564
2033	12		87		0.992554
2049		12		87	0.992554
2050		12		87	0.992554
2051	12		87		0.992554
2068	33			66	1.0
2069			33	66	1.0
2071		60	40		1.0
2073	33	66			0.997452
2076	33	66			0.997452
2083		66	33		0.997452
2085		66	33		0.997452
2090	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain