SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3914

Length: 1362 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3914 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNase PD2 (Fragment) n=1 Tax=Prunus dulcis RepID=Q9LLS1_PRUDU	-	-	53%
FL-Next	sp=Ribonuclease 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	53%
Blast2go	ribonuclease 1	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	68%
Blast2go	anthocyanin biosynthetic process	GO:0009718	Biological Process	68%
Blast2go	response to wounding	GO:0009611	Biological Process	68%
Blast2go	aging	GO:0007568	Biological Process	68%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	68%
Blast2go	endoribonuclease activity	GO:0004521	Molecular Function	68%
Blast2go	cell wall	GO:0005618	Cellular Component	68%
Blast2go	extracellular region	GO:0005576	Cellular Component	68%
Blast2go	plasma membrane	GO:0005886	Cellular Component	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribonuclease T2	IPR001568	-	0.0	-
Sma3	Ribonuclease T2, active site	IPR018188	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P42813

Fln msg:

Fln protein: MTSANGRSIILVLIIFECYFTGVIARSLDFYYFVQQWPGSYCDTRRGCCYPRTGKPASDFSIHGLWPNYSNGKWPQFCDSSREFDYSKISDLKEELNKYWDSLSCPSSDGHKFWGHEWEKHGTCSLNLDEHSYFKTALSLRENMDILGALKKAGIKPDGREYSLRNIKEAIRESTGQLPRIECNRSEEGEHQLYQVYVCVDKWDAFTVIECPFYPHSNCPSMLVFPPFWDNDHKIQTAFTSENNTNGTEDH*

Protein Length: 253

Fln nts: CATGGGGACCATCGCCTTAACACTGATCAAATCTTTTATAAAAACTGGGACAGATGTAGCTGCCATTGGAACAGCCAGCAGAGTTTACTGGAGAAAATCCAATC_-_ATGACAAGTGCCAATGGACGCTCCATAATTTTGGTGCTCATCATATTTGAGTGCTATTTCACCGGTGTTATTGCGAGATCCTTGGATTTCTATTATTTCGTGCAACAGTGGCCTGGTTCATACTGTGATACGCGTAGAGGATGCTGTTACCCTCGCACAGGAAAGCCTGCTTCCGACTTTTCCATTCATGGTCTCTGGCCCAATTACAGCAACGGGAAATGGCCACAGTTCTGTGATTCTTCCAGAGAATTCGATTACTCAAAGATTTCAGATCTGAAGGAAGAGCTGAACAAATATTGGGATTCTTTAAGCTGTCCTAGCAGCGATGGACACAAATTCTGGGGGCACGAATGGGAGAAGCATGGCACTTGCTCTCTCAATCTTGATGAGCATTCATACTTTAAGACGGCTCTTTCCTTGAGAGAAAATATGGACATTCTCGGGGCGCTTAAAAAAGCAGGTATTAAACCTGACGGAAGAGAATACAGTTTGAGGAATATCAAAGAAGCCATTAGAGAAAGCACTGGACAACTGCCAAGAATCGAATGCAACAGAAGCGAGGAGGGAGAGCATCAACTATATCAGGTGTATGTATGTGTTGATAAATGGGACGCTTTCACTGTTATCGAATGCCCCTTTTACCCGCACAGCAATTGCCCTTCCATGCTTGTATTTCCTCCTTTCTGGGACAACGATCACAAGATCCAAACAGCTTTCACAAGCGAAAACAATACTAATGGAACAGAGGATCATTAG___CTCTCCACAGTGAGCATTTCTTTCATCTGTCAAATTTTTAGGGCCAAGGGTTTGTTCAGTCAGGTCGGCCTCTTGATTCCTCAAAGCTGTCATTGAGAAGAATTGAACAAAGAAGCGGTCCGTCGCACTGATTATGGAAACAGAGTGCAGGAGGTGTCTAGGCCATGGCAGGTATGACATGGTTGTTTTGACAGCCTGTGTGCCTGTTTGTTGTTTCAGCCTTCCAATTTGAGCTATTTTCTGAAGTGATCGGAGAAAGGCCGAGTAGGGTTAGGGTTTTATTCTGTGTGTTTTCTCGCTGCTCGAAAATTTACAAAACAGGTCAATGTTTTATACATTTAGACGATAATGCACTGTTTCAGTGCTTTCTTCAAGGAATTGCAGAAAATCGTGTTTGTATTGGTCATAGTTTGCTGTACTGGTCATAGTTTATGTATAGTTAAATTCCAGACTCGAATTCTGAAGGATTTCGCAGAGAAACCAGATTATTTTGATCTTGTCC

Fln Alignment:

Contig3914___IILVLIIFECYFTGVIARSLDFYYFVQQWPGSYCDTRRGCCYPRTGKPASDFSIHGLWPNYSNGKWPQFCDSSREFDYSKISDLKEELNKYWDSLSCPSSDGHKFWGHEWEKHGTCSLN-LDEHSYFKTALSLRENMDILGALKKAGIKPDGREYSLRNIKEAIRESTGQLPRIECNRSEEGEHQLYQVYVCVDKWDAFTVIECPFYPHSNCPSMLVFPPF
P42813______________ISLLVILPSVFSASSSSEDFDFFYFVQQWPGSYCDTQKKCCYPNSGKPAADFGIHGLWPNYKDGTYPSNCDASKPFDSSTISDLLTSMKKSWPTLACPSGSGEAFWEHEWEKHGTCSESVIDQHEYFQTALNLKQKTNLLGALTKAGINPDGKSYSLESIRDSIKESIGFTPWVECNRDGSGNSQLYQVYLCVDR-SGSGLIECPVFPHGKCGAEIEFPSF

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1007		60		40	1.0
1056	60		40		1.0
1263			80	20	0.995493
1265		20		80	0.995493
1266		20		80	0.995493
1342		75		25	0.996473
1345	25			75	0.996473
1348			25	75	0.996473
1349	75	25			0.996473
1350	50	50			1.0
1351	25	25	50		0.995533
1354		25	50		0.995533
1356	25			75	0.996473
1362	33	66			0.997452
1364		66	33		0.997452
1366		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain