SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3882

Length: 408 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene3882
ATGGGTGTGGAAAGGCAGCAGGAGAAGCATATCCATGGAGAAAGTATACGCAGCGATTAACGTAACGGAAAATGGAAATAATGATGATCAAGGCAAAGGTATTGCAGAGGTCAATCCTCATCCCAAGAAAGGCATCCTTTCCTCAGTAATTGATTTGGCCGAGAAAATCGTGGTTCGCTCGCTCTACGGCTCCGCCAAACCTCTGCACTACCTCGCCGGTAATTTCGCACCGGCCGAAAAAGAAACTCCGCCGCACAGAGACTTGTCCGTCCTTGGAAATCTCCCTAAATGCTTGGATGGAGAATTTGTGCGGGTCGGTCCCAATCCCAGATTTGCCCCCGTCGCTGGCTATCATTGGTTCGACGGAGACGGAATGCTACATGGTTTGAGGATTAAAGATGGCACATT

Ace file of the UniGene sp_v2.0_unigene3882 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Carotenoid cleavage dioxygenase 1 n=1 Tax=Manihot esculenta RepID=E2DQG6_MANES	-	-	1.0e-39	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	carotenoid cleavage dioxygenase 1	-	-	0.0	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on single donors with incorporation of molecular oxygen, With incorporation of two atoms of oxygen.	EC:1.13.11.-	-	0.0	79%

Source	KEGGs	Term	Identity
Blast2go	Benzoate degradation	00362	79%
Blast2go	Tryptophan metabolism	00380	79%
Blast2go	Arachidonic acid metabolism	00590	79%
Blast2go	Xylene degradation	00622	79%
Blast2go	Toluene degradation	00623	79%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	79%
Blast2go	Naphthalene degradation	00626	79%
Blast2go	Aminobenzoate degradation	00627	79%
Blast2go	Nitrotoluene degradation	00633	79%
Blast2go	Betalain biosynthesis	00965	79%
Blast2go	Metabolic pathways	01100	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Carotenoid oxygenase	IPR004294	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMX1

Fln msg: Distance to subject end: 425 aas, your sequence is shorter than subject: 124 - 540

Fln protein: MEKVYAAINVTENGNNDDQGKGIAEVNPHPKKGILSSVIDLAEKIVVRSLYGSAKPLHYLAGNFAPAEKETPPHRDLSVLGNLPKCLDGEFVRVGPNPRFAPVAGYHWFDGDGMLHGLRIKDGT

Protein Length: 125

Fln nts: ATGGGTGTGGAAAGGCAGCAGGAGAAGCATATCC_-_ATGGAGAAAGTATACGCAGCGATTAACGTAACGGAAAATGGAAATAATGATGATCAAGGCAAAGGTATTGCAGAGGTCAATCCTCATCCCAAGAAAGGCATCCTTTCCTCAGTAATTGATTTGGCCGAGAAAATCGTGGTTCGCTCGCTCTACGGCTCCGCCAAACCTCTGCACTACCTCGCCGGTAATTTCGCACCGGCCGAAAAAGAAACTCCGCCGCACAGAGACTTGTCCGTCCTTGGAAATCTCCCTAAATGCTTGGATGGAGAATTTGTGCGGGTCGGTCCCAATCCCAGATTTGCCCCCGTCGCTGGCTATCATTGGTTCGACGGAGACGGAATGCTACATGGTTTGAGGATTAAAGATGGCACATT

Fln Alignment:

Contig3882___DDQGKGIAEVNPHPKKGILSSVIDLAEKIVVRS--LYGSAKPLHYLAGNFAPAEKETPPHRDLSVLGNLPKCLDGEFVRVGPNPRFAPVAGYHWFDGDGMLHGLRIKDG
B8LMX1______________EDDSKGYKAVNPHPKGGLVSWVVDMVEKLVVEASTLYGSRKPMQFLSGNFAPVS-ETAPKSHLPVVGHLPSCLDGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
80		60		40	1.0
171			40	60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain