SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3870

Length: 562 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene3870
CGTCGTGACCTTGGCTGTCACTCAAAACAAATTCGGACGTCAGATTCATTCCCTTTAGTGGTGGCCCACGTAAGTGCGTTGGTGATCAGTTTGCATTGCTGGAATCCCTTGTTGCACTGGCAATTTTACTGCAGAACTTTAATTTTGAGCTTGTTCCTAACCAAAACATAGGAATGACCACAGGAGCCACTATTCATACCACAACAGGACTGAACATGACTGTCACTCAACGAGAAAATAAGGTTACAGAGCTTGCAACTTTGTAATAGGAGAAAACTCTTTTTCTATATTTCTGTTCCTATGGATTCCAAACTGTGTTCATCTCATTGGCCAGAATTATTAGTTATGAAAAGAAACCAAGGAAATTTAATTGATTTGGACTGCTGATACTATCAATGAGATCTGAGAAAATTTCTCTAACTCTGCATTGTACGCTGCAAGTTATCAAGTTTTGTCAACCAACAACTTTGGCTGTCTGTGACTTTCAGAAACTAAGAGAGAGAGAGAGAGAGAGTCCAAGCTTTGTTGCAAAATTAATTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v2.0_unigene3870

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrom P450 -like protein [Arabidopsis thaliana]	-	-	3.0e-08	45%
FL-Next	sp=Carotene epsilon-monooxygenase, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	72%
Blast2go	carotene epsilon- chloroplastic-like	-	-	5.77796e-12	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Unspecific monooxygenase.	EC:1.14.14.1	-	5.77796e-12	87%

Source	KEGGs	Term	e value	Identity
Blast2go	Fatty acid metabolism	00071	5.77796e-12	87%
Blast2go	Steroid hormone biosynthesis	00140	5.77796e-12	87%
Blast2go	Caffeine metabolism	00232	5.77796e-12	87%
Blast2go	Tryptophan metabolism	00380	5.77796e-12	87%
Blast2go	Arachidonic acid metabolism	00590	5.77796e-12	87%
Blast2go	Linoleic acid metabolism	00591	5.77796e-12	87%
Blast2go	Aminobenzoate degradation	00627	5.77796e-12	87%
Blast2go	Retinol metabolism	00830	5.77796e-12	87%
Blast2go	Metabolism of xenobiotics by cytochrome P450	00980	5.77796e-12	87%
Blast2go	Drug metabolism - cytochrome P450	00982	5.77796e-12	87%
Blast2go	Drug metabolism - other enzymes	00983	5.77796e-12	87%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	5.77796e-12	87%
Blast2go	Metabolic pathways	01100	5.77796e-12	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	carotenoid biosynthetic process	GO:0016117	Biological Process	5.77796e-12	87%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	5.77796e-12	87%
Blast2go	zeinoxanthin epsilon hydroxylase activity	GO:0009974	Molecular Function	5.77796e-12	87%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	5.77796e-12	87%
Blast2go	heme binding	GO:0020037	Molecular Function	5.77796e-12	87%
Blast2go	oxygen binding	GO:0019825	Molecular Function	5.77796e-12	87%
Blast2go	aromatase activity	GO:0070330	Molecular Function	5.77796e-12	87%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	5.77796e-12	87%

Source	InterPros	Term	Type	Identity
Sma3	Tropomyosin	IPR000533	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q6TBX7

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 88 - 539

Fln protein: S*PWLSLKTNSDVRFIPFSGGPRKCVGDQFALLESLVALAILLQNFNFELVPNQNIGMTTGATIHTTTGLNMTVTQRENKVTELATL*

Protein Length: 89

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAACAAATTCGGACGTCAGATTCATTCCCTTTAGTGGTGGCCCACGTAAGTGCGTTGGTGATCAGTTTGCATTGCTGGAATCCCTTGTTGCACTGGCAATTTTACTGCAGAACTTTAATTTTGAGCTTGTTCCTAACCAAAACATAGGAATGACCACAGGAGCCACTATTCATACCACAACAGGACTGAACATGACTGTCACTCAACGAGAAAATAAGGTTACAGAGCTTGCAACTTTGTAA___TAGGAGAAAACTCTTTTTCTATATTTCTGTTCCTATGGATTCCAAACTGTGTTCATCTCATTGGCCAGAATTATTAGTTATGAAAAGAAACCAAGGAAATTTAATTGATTTGGACTGCTGATACTATCAATGAGATCTGAGAAAATTTCTCTAACTCTGCATTGTACGCTGCAAGTTATCAAGTTTTGTCAACCAACAACTTTGGCTGTCTGTGACTTTCAGAAACTAAGAGAGAGAGAGAGAGAGAGTCCAAGCTTTGTTGCAAAATTAATTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

Contig3870___KTNSDVRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNFNFELVPNQNIXXXXXXXXXXXXXLNMTVTQR
Q6TBX7______________ETNTDFKFIPFSGGPRKCVGDQFALMEAIVALAVFLQRLNVELVPDQTISMTTGATIHTTNGLYMKVSQR

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
220	83			16	0.994512
223	83		16		0.994512
228		16	83		0.994512
501	88			11	0.923564
502	11		88		0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
495	514	AG AG AG AG AG AG AG AG AG AG	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain