SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3861

Length: 1396 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3861 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	lysocardiolipin and lysophospholipid acyltransferase [Arabidopsis thaliana] ref\|NP_974335.1\| lysocardiolipin and lysophospholipid acyltransferase [Arabidopsis thaliana] ref\|NP_001030724.2\| lysocardiolipin and lysophospholipid acyltransferase [Arabidopsis	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	lysocardiolipin and lysophospholipid acyltransferase	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	76%
Blast2go		GO:0008415	Molecular Function	76%
Blast2go	membrane	GO:0016020	Cellular Component	76%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	76%
Blast2go	plastid	GO:0009536	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phospholipid/glycerol acyltransferase	IPR002123	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNT3

Fln msg: your sequence is shorter than subject: 408 - 443

Fln protein: FKSEIDTELKDLNRSGGCSEKSGLLNNRKGQTHRPLTLLRVIRGVLCLVVLLTTAFTTLVFLTPVSFVILRLFSIHYSREATSFLFGHWLAMWPLLFEKINKTKVVFAGDSVPPRERILLISNHRTEVDWMYMWDLALRKDCLGYIKYILKSSVRNIPIFGWAFYILEFILIERKWELDKPVIESMLATFKDPRDPLWLVLFPEGTDFTEKKCKRSQQFAQENGLPILNNVLLPRTKGFTACLDSLRGSLDAVYDVTIGYKYRWPLFMDNVFGVDPAEVHLHIRRVPLSEIPPSEDGGAAWLIEAFRRKDELLSTFSKEGCFPGAVNEEELPSFKCFFNLAVMIIATGFFSTIIIISSMWLKIYLALSCVYFATATYLNCRPTPILGCLKGWMLHSSTFISSSQQDL*

Protein Length: 409

Fln nts: TTCAAATCTGAAATAGATACTGAATTAAAGGATTTGAACAGAAGTGGAGGTTGTTCAGAGAAAAGTGGATTGCTGAATAACCGAAAGGGTCAAACACATAGACCCTTGACATTGCTGAGGGTAATTAGAGGAGTTCTATGTTTGGTAGTGCTTTTGACAACTGCGTTCACGACCTTGGTTTTCTTAACTCCTGTTTCATTTGTTATACTGCGTCTGTTTAGTATACATTACAGCAGGGAGGCAACATCTTTCTTATTTGGCCACTGGCTAGCCATGTGGCCCTTGTTGTTTGAAAAGATAAACAAGACAAAGGTTGTATTTGCCGGAGATAGTGTCCCTCCAAGAGAGCGCATTTTACTGATTTCAAACCACCGAACAGAGGTAGATTGGATGTACATGTGGGACCTTGCACTGCGTAAAGATTGCCTGGGTTACATCAAATATATTCTCAAGAGTAGTGTGCGCAATATACCTATCTTTGGTTGGGCATTTTACATCCTTGAGTTTATTCTGATTGAGAGAAAATGGGAGCTGGACAAACCAGTCATAGAATCGATGCTTGCAACATTCAAGGACCCACGAGACCCCTTGTGGCTTGTTCTCTTTCCCGAAGGCACAGACTTCACAGAGAAGAAATGCAAAAGAAGCCAACAGTTTGCTCAAGAAAATGGTTTACCTATCCTAAACAATGTGCTTCTACCTAGAACAAAAGGTTTCACTGCTTGCCTGGATAGTCTTCGGGGTTCTCTAGATGCAGTTTATGATGTGACGATTGGTTACAAGTATCGATGGCCTCTGTTTATGGATAATGTCTTTGGAGTTGATCCCGCCGAAGTACATCTTCATATTCGTCGTGTACCACTCAGTGAGATTCCTCCCAGTGAAGATGGAGGTGCCGCTTGGCTTATTGAAGCTTTTCGTCGTAAGGACGAGCTGCTTTCTACTTTCTCTAAAGAAGGTTGTTTCCCCGGCGCTGTCAACGAAGAGGAACTTCCTTCCTTCAAGTGTTTTTTCAACTTAGCTGTGATGATTATTGCCACGGGCTTCTTTTCCACTATCATTATTATTTCTTCCATGTGGCTAAAAATATATCTTGCGTTAAGCTGTGTGTATTTTGCCACTGCAACTTACCTCAATTGCAGGCCAACACCTATACTAGGGTGTCTAAAGGGATGGATGTTACATAGTAGTACCTTCATATCATCAAGTCAACAAGATTTGTGA___CTTGCTAATACCTTTTATGCACACCATAGGAAATACTTATCATTAATTTTTTTTTGATTGCCTGTTGTGTAAACGTGCCTTCTTTGGCTTCTGATTAGAAGGATGCAGTTCAGTATTCTGGATTATTAACATGGCTAATGGTTGTATCATAGACACAGCTCATATATGGAAC

Fln Alignment:

Contig3861___ELKDLNRSGGCSEKSGLLNNRKGQTHRPLTLLRVIRGXXXXXXXXXXXXXXXXXXXXVSFVILRLFSIHYSREATSFLFGHWLAMWPLLFEKINKTKVVFAGDSVPPRERILLISNHRTEVDWMYMWDLALRKDCLGYIKYILKSSVRNIPIFGWAFYILEFILIERKWELDKPVIESMLATFKDPRDPLWLVLFPEGTDFTEKKCKRSQQFAQENGLPILNNVLLPRTKGFTACLDSLRGSLDAVYDVTIGYKYRWPLFMDNVFGVDPAEVHLHIRRVPLSEIPPSEDGGAAWLIEAFRRKDELLSTFSKEGCFPGAVNEEELPSFKCFFNLAVMXXXXXXXXXXXXXXSMWLKIYLALSCVYFATATYLNCRPTPILGCLKGWMLHSSTFISSSQ
B8LNT3______________ELKDLNLIGGFTEKINLPENQKVQRHRPLTFWRVLRGILCLMVLLSTALMALIFFGPPSFLILRLFSIHYSRRVTSFLFGHWLAMWPLWFEKINGTKVIFAGERVPARERVLLLANHRTEVDWMYIWDFAMRKDRLGYLKYVLKSSVRNAPIFGWGFHILEFILVERKWEVDEPVIESMLSTFKDPQDPLWLILFPEGTDFTEQKCLRSQRFAEENHLPILKNVLQPKTKGFYSCLTLLRDSLDAVYDVTIAYKHRFPLFMDNAYGTDPAEVHIHVRRVPLHEIPTSENEAAAWLVEAFRLKDALLSNFYKEGSFPNSGTEEELPNFKCFLNLLVIIGLSGLFLFLTFSSFMWIKVYVASSCVYLAAATYFNSRPKPIFGSLKR-RIRGNTYKSSHQ

SNPs (tot: 62)

Position	A %	C %	G %	T %	Probability
275	20		80		0.995493
440		80		20	0.995493
441		80	20		0.995493
442	20			80	0.995493
443			20	80	0.995493
444		80		20	0.995493
445			20	80	0.995493
446	20			80	0.995493
447		20		80	0.995493
450	80	20			0.995493
451		20	80		0.995493
454	80		20		0.995493
458		20	80		0.995493
459	80		20		0.995493
461	80	20			0.995493
518		87	12		0.992554
521	12		87		0.992554
522		12	87		0.992554
525		12	87		0.992554
528			12	87	0.992554
529		87	12		0.992554
551	85		14		0.993533
554		14		85	0.993533
556	85	14			0.993533
557	85	14			0.993533
558	14		85		0.993533
560			14	71	0.984337
565	14		14	71	0.984337
566	14		14	71	0.984337
568		14	85		0.993533
569	16		83		0.994512
570	16	83			0.994512
573			83	16	0.994512
574	83	16			0.994512
575	16			83	0.994512
577	87		12		0.992554
580			12	87	0.992554
588		85	14		0.993533
589	85			14	0.993533
590			14	85	0.993533
591	14			85	0.993533
593			14	85	0.993533
597	14			85	0.993533
598	85		14		0.993533
599	85		14		0.993533
600	85			14	0.993533
603			85	14	0.993533
605		16	83		0.994512
710	33			66	0.997452
711		33		66	0.997452
712	33		66		0.997452
749		25		75	0.996473
777	66			33	0.997452
848	33			66	0.997452
850	33			66	0.997452
851	66			33	0.997452
855	33	66			0.997452
1085	88		11		0.923564
1188	14		85		0.993533
1191			85	14	0.993533
1202			83	16	0.994512
1267		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain