SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3838

Length: 1281 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene3838

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Molybdopterin synthase catalytic subunit [Arabidopsis thaliana] ref\|NP_001078051.1\| Molybdopterin synthase catalytic subunit [Arabidopsis thaliana] ref\|NP_001118518.1\| Molybdopterin synthase catalytic subunit [Arabidopsis thaliana] sp\|O22827.1\|MOC2B_ARATH	-	-	51%
FL-Next	sp=Molybdopterin synthase catalytic subunit; Arabidopsis thaliana (Mouse-ear cress).	-	-	57%
Blast2go	molybdopterin synthase catalytic subunit	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	Mo-molybdopterin cofactor biosynthetic process	GO:0006777	Biological Process	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Molybdopterin biosynthesis MoaE	IPR003448	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O22827

Fln msg:

Fln protein: MAEGEQDFVEIVDNSHLDIKKYTDLVRSPAAGAIATFIGTTRDTFEDKQVLELRYEAYVPMALKQLRAICSAARNRWKLMRLAVAHRLGVVPVGEESVFVAVSSVHRRDALEACEYIIDEIKVSVPIWKKEVYTNGEVWKENSDFFPRKPGESEEEVSLKQQKGHERLACCGCKERVFGNGSDDNSYRGFEFVGEIEKEPIENSHCEAGAIAQHS*

Protein Length: 217

Fln nts: ATTCTATATGTTTTGGTATTTGGAAACCAATATTGAGAAAATTAATGCCACGTTGTAGGCAACTCGTGTCGGAGATTATTATGGTTCTGTGAACTTTAAGATTGGTACAGGTGGCTCCCTAATAGTTTGAAAATTCAACTGTTAATATTTAGTGTTAGCTTCCAGGAACACGATTTTGTGGTTATTCCTGTAGGTTTTGTGTAAATTGTGCTGAGAAGTCTCGGAAGGTTCAATTGCTTCCGGTTGTGAAGGCATAGAAAATAGTGTAGTTTACTCCTTGAAAAA_-_ATGGCTGAAGGAGAACAAGATTTTGTTGAAATAGTTGATAATAGTCACTTGGATATTAAAAAATATACAGATTTAGTACGAAGTCCAGCAGCTGGAGCGATAGCGACCTTCATTGGAACAACAAGGGATACATTTGAGGATAAACAGGTTCTGGAGCTTCGATATGAGGCTTATGTCCCCATGGCCCTTAAACAGCTAAGAGCAATATGCTCTGCAGCTAGAAACAGATGGAAATTAATGAGGCTTGCTGTGGCTCATCGTCTTGGTGTTGTACCTGTTGGCGAAGAAAGCGTTTTTGTTGCAGTGTCCTCTGTCCACAGGAGAGATGCTCTTGAAGCCTGTGAATACATTATAGATGAAATTAAAGTATCAGTTCCTATTTGGAAAAAGGAAGTTTATACCAATGGTGAGGTCTGGAAAGAGAATTCTGATTTTTTCCCGAGAAAACCAGGGGAAAGTGAAGAGGAGGTAAGTCTGAAACAGCAGAAAGGTCATGAGCGTTTGGCGTGCTGTGGCTGCAAGGAAAGAGTGTTTGGTAATGGTAGCGATGACAATAGCTATCGTGGATTCGAATTTGTGGGGGAGATTGAAAAAGAACCAATTGAAAATTCGCATTGTGAAGCGGGAGCTATTGCACAACACTCCTAG___TGGAGGAGGAAATTGACAAGGTTAGTTGTCATACTTATTTCCTCGAGGACAAATGCATTTGCTTTGTTTGGGATCGGGATTGCATCTTTTCAAACATTTAAGATCTTTTTCTGTCCCGGGATGAGCTACTTTATGCTCAAGCTTCACAGGCTGTATTTGAGGTAAGCTCAGGGACAGATCTAGTTTCTTGTAGAAAGTTTACCGTGGGAGAAGGAAATTTAATTGCTCAGTTCCTTTTCTAAATAAGAAATTTCGTTTAGTCCTCTTTTCAAGGAGGAGAGGCTGCAGACTGGCTATGATTTTCATCTGATTTGGTGATATTTCAGACGCATTCAAGATGTATATTAT

Fln Alignment:

Contig3838___MAEGEQDFVEIVDNSH-LDIKKYTDLVRSPXXXXXXXXXXXXRDTFEDKQVLELRYEAYVPMALKQLRAICSAARNRWKLMRLAVAHRLGVVPVGEESVFVAVSSVHRRDALEACEYIIDEIKVSVPIWKKEVYTNGEVWKENSDFFPRKPGESEEEVSLKQQ---KGHERLACCGCKERV
O22827______________MSAEEKNLIEILEEGHKVDVVKYIDYVSAPQAGAIATFSGTTRDMFEGKTVLELRYEAYVPMATRCLSSICTTARSTWDIHKIAVAHRLGPVPVGETSVLIAVSSVHRADGLDACKFLIDELKASVPIWKKEVYTNGEIWKENSEFMEKRLELAEKRDSIVKKTVVEEHRRRGCCGSKVRV

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
453	80			20	0.995493
550		20		80	0.995493
556	40			60	1.0
613		33		66	0.997452
634		66		33	0.997452
792		25		75	0.996473
795	25		75		0.996473
796		75	25		0.996473
797		25	75		0.996473
805		33	66		1.0
806	33		66		1.0
809		33	66		1.0
810	33	66			1.0
837		66		33	1.0
867	50			50	1.0
885	50		50		1.0
918	50		50		1.0
926		50		50	1.0
936	33	33	33		1.0
938	66	33			1.0
942	33		66		1.0
943	66	33			1.0
944		33	66		1.0
945			66	33	1.0
946	66			33	1.0
949	66	33			1.0
950	66			33	1.0
951	66		33		1.0
953		33		66	1.0
954	33		66		1.0
955	66	33			1.0
997	66		33		1.0
1147	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain