SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3792

Length: 1634 nt

Origin of reads: Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3792 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	asparaginyl-tRNA synthetase, cytoplasmic 1 [Arabidopsis thaliana] sp\|Q9SW96.1\|SYNC1_ARATH RecName: Full=Asparaginyl-tRNA synthetase, cytoplasmic 1; AltName: Full=Asparagine--tRNA ligase 1; Short=AsnRS 1; AltName: Full=Protein EMBRYO DEFECTIVE 2755 gb\|AAD4	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	27%
Blast2go	asparaginyl-trna cytoplasmic 1-like	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Asparagine--tRNA ligase.	EC:6.1.1.22	-	0.0	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminoacyl-tRNA biosynthesis	00970		0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	asparaginyl-tRNA aminoacylation	GO:0006421	Biological Process	77%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	77%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	77%
Blast2go	asparagine-tRNA ligase activity	GO:0004816	Molecular Function	77%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	77%
Blast2go	mitochondrion	GO:0005739	Cellular Component	77%
Blast2go	chloroplast	GO:0009507	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	WHEP-TRS	IPR000738	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Aspartyl/Asparaginyl-tRNA synthetase, class IIb	IPR002312	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	Aminoacyl-tRNA synthetase, class II (D/K/N)	IPR004364	-	-
Sma3	Nucleic acid binding, OB-fold, tRNA/helicase-type	IPR004365	-	-
Sma3	Asparaginyl-tRNA synthetase, class IIb	IPR004522	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3	Protein of unknown function DUF821, CAP10-like	IPR008539	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Aminoacyl-tRNA synthetase, class II (D/K/N)-like	IPR018150	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX07

Fln msg: your sequence is shorter than subject: 497 - 566

Fln protein: MGTVSCSTNLQVVVDASVATLGQLTPTGTSILVEGVLRKAAEGTKNKVELKVEKVLQVGTVDPAKYPISRTRLPLEFLRNYVHLRPRTNTFSSVARIRNALAYATHTFFQNHGFLYVHTPIITTSNFPGTGEAFQVTTLFSEADRAEWELRALRQPTDTDLLETRNAVTQKTKKVLDLKKTNKESKATIDAAIEDLEKTKDLLSKLEEKFRSKPVKVPEKDGRIDYSRDFFSRQAYLTVSGQFHVESYACALSSVYTFGPTFRPELSQSTRHLAEYWTVEPEIAFADLEDGMNCAEDYLKFTCQWLLENCIDDMKFMSKQFDKNAIDRLRQVASTPFARITYNEAIELLKKVPEKKFEIKVEMGMDLAPEHERYLPEEIFKKPVIVYNYPKENKPFYVRLNDDGKTVASMEVLVPKIGGIISGSQREERYEVIEKRIQELGLSKEPYEWYLDLRRFGTVKHTGFGLGFERTVLFATGLDSIKDAIPFPRVHGRAHP*

Protein Length: 498

Fln nts: ATGGGGACAGTTTCTTGCTCTACAAATCTCCAGGTTGTAGTTGACGCTTCGGTTGCCACTCTCGGCCAGCTGACACCTACTGGAACGAGTATTCTAGTGGAAGGGGTCCTGAGAAAAGCAGCAGAAGGAACAAAGAATAAGGTGGAACTAAAAGTTGAGAAGGTTTTGCAAGTTGGAACGGTGGATCCTGCCAAGTATCCAATTTCAAGGACGCGGCTGCCACTGGAATTCCTCAGAAACTATGTTCACCTCCGCCCTAGAACAAACACGTTTTCCTCTGTTGCCCGAATTCGTAATGCTCTTGCATATGCAACGCATACTTTCTTTCAAAACCACGGGTTTCTGTATGTCCACACACCTATCATCACGACCAGTAATTTCCCGGGTACAGGCGAGGCTTTTCAAGTCACAACACTGTTTAGTGAAGCAGACAGGGCAGAATGGGAGCTCAGGGCTCTTAGACAACCTACTGACACGGATCTGCTAGAGACCAGGAATGCAGTAACACAGAAAACTAAAAAGGTATTGGATCTCAAGAAAACTAACAAGGAGTCTAAAGCTACCATAGATGCAGCCATTGAAGACCTTGAGAAGACCAAGGACTTGCTGTCCAAGTTGGAAGAAAAATTCAGATCGAAGCCAGTCAAGGTTCCGGAAAAGGATGGGAGGATTGATTACTCCCGAGATTTCTTTTCTCGTCAGGCCTATTTGACAGTATCAGGTCAGTTTCATGTGGAGAGCTATGCCTGTGCCCTCAGTAGCGTTTACACATTTGGACCAACCTTCCGACCTGAACTATCTCAGAGCACAAGGCATCTTGCTGAGTACTGGACAGTTGAGCCTGAAATTGCCTTTGCAGACTTAGAGGATGGCATGAACTGTGCTGAGGACTACCTGAAATTCACATGTCAATGGCTTCTGGAGAACTGCATCGATGATATGAAATTCATGTCAAAACAGTTTGACAAGAATGCAATTGATCGTCTTCGTCAGGTGGCCTCAACACCTTTTGCAAGGATTACCTACAACGAAGCAATTGAACTCCTCAAGAAGGTTCCAGAGAAAAAGTTTGAGATCAAAGTTGAGATGGGTATGGATTTAGCCCCAGAGCATGAGAGATATTTACCCGAGGAAATTTTCAAAAAACCAGTAATTGTCTATAATTATCCAAAAGAAAACAAGCCGTTCTACGTGCGTCTAAATGATGATGGTAAAACAGTTGCTTCCATGGAGGTGCTTGTACCAAAGATTGGAGGAATTATAAGTGGAAGTCAAAGAGAGGAGCGTTATGAAGTCATTGAAAAAAGGATTCAAGAGCTAGGATTGTCAAAAGAGCCATATGAATGGTATCTGGACCTACGCAGATTTGGGACTGTTAAACATACAGGATTTGGCCTCGGCTTTGAACGCACAGTGCTTTTCGCCACCGGTTTAGATAGCATAAAAGATGCCATTCCTTTCCCCAGAGTTCATGGAAGAGCACATCCTTAA___ATAGTGTTTAGTTTTAGTGGTACTTGAATACATAGTTAAATAAAGGCCAGCTATTTAGTAATGATGGCCAATGAAATATTTATTGTAAACTTCACTATATTATTTGAAGTTCCTCTCTTTGATAAAGAAAAACTAGATTAAAT

Fln Alignment:

Contig3792___TQKTKKVLDLKKTNKESKATIDAAIEDLEKTKDLLSKLEEKFRSKPVKVPEKDGRIDYSRDFFSRQAYLTVSGQFHVESYACA-LSSVYTFGPTFRPELSQSTRHLAEYWTVEPEIAFADLEDGMNCAEDYLKFTC-QWLLENCIDDMKFMSKQFDKNAIDRLRQVASTPFARITYNEAIELLKKVPEKKFEIKVEMGMDLAPEHERYLPEEIFKKP----VIVYNYPKENKPFYVR-LNDDGKTVASMEVLVPKIGGIISGSQREERYEVIEKRIQELGLSKEPYEWYLDLRRFGTVKHTGFGLGFERTVLFATGLDSIKDAIPFPRVHGRAHP
A9NX07______________TRLNYRVLDLRTPANQGIFRVQSYVSMLFRQFLISEGFVELHTPKLIAGASEGGSSVFKLDYKGQPACLAQSPQLHKQMAICADFGRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYFEVLDILDKLFITIFDGLNEHCKKELHAINQQYPFEPLKYLRKTL-----RLTFQEGVQMLKEAG-----IEVDPLGDFNTETERKLGGLVREKYDTDFYILHRYPLAVRPFYTMPCIDDPLYSNSFDVFI-RGEEIISGAQRVHEPEFLTKRAKELGIDVNTISTYIDSFRWGAVPHGGLGVGLERVVMLFCALNNIRKTSLFPRDPQRLAP

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1314	80		20		0.995493
1605		25	75		0.996473
1607		25	75		0.996473
1608	75	25			0.996473
1609	25			75	0.996473
1610		25		75	0.996473
1611	25			75	0.996473
1612	25		75		0.996473
1614	75	25			0.996473
1615		25	75		0.996473
1618		75		25	0.996473
1620	75			25	0.996473
1621		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain