SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3782

Length: 1296 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3782 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	plant intracellular ras group-related LRR 1 [Arabidopsis thaliana] dbj\|BAB09679.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAU95419.1\| At5g05850 [Arabidopsis thaliana] gb\|AAV59262.1\| At5g05850 [Arabidopsis thaliana] gb\|AAW57410.1\| plant intracel	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	leucine-rich repeat-containing	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQU6

Fln msg: Overlapping hits, possible frame ERROR between 243 and 242, your sequence is shorter than subject: 355 - 524

Fln protein: EYENLLKDAEKQLADIYA*SWCYSKVLPVNDEVNEEVVRILQEASQRNLEKLELKGRMLRFVPEAFGNLATLTLLDLSNNxxLEALPDSIAGLTNLEALYLSSNMLISLPDSLGLLKSLKVLNVSANKLKALPDRISRCIALIELDASFNQLAYLPTNIGNELVNLQKFFVHLNKLRSLPSSICEMESLRVLDVHFNELRSLPLAIGKLQNLEILNASSNFSDLTTIPNTIGDLTNLVDLDLSNNQIKELPCSFGRLNNLKKLNLDQNPLVIPPQEIVQQGLDAVLEYMKKRWVDILLEEELKSKIEAKNNQAEQNWMQRGVQWLEKLFVGNLTGYVGTTQKNSLEDDFLNQQL*

Protein Length: 356

Fln nts: GAATATGAGAATTTATTGAAGGATGCAGAAAAACAACTTGCTGATATATATGCGTGATCTTGGTGTTACTCTAAAGTGCTCCCTGTGAATGATGAGGTGAATGAGGAAGTGGTGAGGATTCTGCAAGAAGCATCCCAGAGAAATCTCGAGAAGTTAGAATTGAAAGGACGGATGCTGAGGTTTGTTCCAGAGGCGTTTGGCAACCTGGCAACACTAACATTGCTCGACCTTTCAAATAATxxxxxxCTGGAGGCTCTCCCTGATTCAATTGCAGGCCTCACAAATCTGGAGGCACTGTATTTGTCTTCTAACATGTTGATCTCGCTGCCAGATTCTTTAGGGCTTTTGAAAAGTCTGAAGGTCCTAAATGTTTCGGCAAACAAACTGAAAGCATTACCCGACAGGATTTCGAGATGCATTGCATTGATTGAGCTGGATGCTAGTTTCAACCAGTTGGCCTATTTACCAACCAACATTGGGAATGAGCTTGTTAATCTTCAGAAATTCTTTGTCCACTTAAATAAGCTAAGGTCCCTGCCATCTTCTATTTGTGAAATGGAATCATTGAGGGTTTTGGATGTCCATTTCAATGAGCTAAGGTCGCTTCCTTTAGCTATTGGCAAATTGCAAAATCTTGAAATCTTGAATGCCAGCAGCAATTTCAGTGATTTAACTACCATTCCAAACACAATTGGTGATTTGACCAATCTTGTTGACTTAGATCTGAGCAACAATCAAATCAAAGAATTGCCTTGTTCGTTTGGAAGATTAAACAATTTGAAGAAACTGAACCTGGATCAAAACCCCCTTGTCATCCCACCACAGGAGATCGTTCAGCAGGGTCTGGATGCTGTATTGGAATACATGAAAAAGAGGTGGGTAGACATTTTGCTGGAGGAGGAATTGAAAAGTAAAATAGAAGCAAAAAATAACCAAGCTGAGCAGAACTGGATGCAGCGTGGTGTTCAATGGTTGGAAAAGTTGTTTGTTGGAAACCTTACAGGATATGTAGGAACCACCCAAAAAAATTCACTAGAGGATGATTTCTTAAACCAACAACTATAAAGACGGTAGTTCTTCGCTCTTTCATGTAAAGTTTGTGTTTGCATTTTTATTGTATCGGAGATTTGTACATTTCGAGGTAGTCATTAGGTAGAGTGAAGGTTGAGGATAATAATGTGTAAATTTCATTTTCTTACGCATAAACTGTCATATTGCTGGCTGTTGAATGTCCGACCTGCATAGGGAAGAGCTTTGACTAAATGTATTTTTTTGTATATGTGTAAGCCTCAACTTGT

Fln Alignment:

Contig3782___YENLLKDAEKQLADIYA*SWCYSKVLPVN---------DEVNEEVVRILQEASQRNLEKLELKGRMLRFVPEAFGNLATLTLLDLSNNxLEALPDSIAGLTNLEALYLSSNMLISLPDSLGLLKSLKVLNVSANKLKALPDRISRCIALIELDASFNQLAYLPTNIGNELVNLQKFFVHLNKLRSLPSSICEMESLRVLDVHFNELRSLPLAIGKLQNLEILNASSNFSDLTTIPNTIGDLTNLVDLDLSNNQIKELPCSFGRXXXXXXXXLDQNPLVIPPQEIVQQGLDAVLEYMKKRWVDIXXXXXLK--SKIEAKNNQAEQNWMQRGVQWLEKLFVG---NLTGYVGTTQKNSLEDDFLNQQ
B8LQU6______________YEDLLHEAEERLTTIYREA--ESGTQPVQSVDGNDDDGDEMNEEVVRILQEASERRLDRVELTSRNLKHFPEGFCKITTLVLVNLSRNxIQAVTDSIAGLVNLETLDLSGNVLVSLPDSIGLLKRLKFLNISGNKLKSLPDSISMCSELIELDASYNQLTYLPTNFGYQLANLQKLLVQLNKLRSLPSSVCELKSLRYLDVHFNELRSLPEALGDLKNLEVLNASSNFSDLVSLPDSIGELTNLVELDVSNNQIKELPYSFGSLQNLKKLNLDQNPLMTPPNEIVVQGVEAVKEHMAKRWLDYLLEEEQKYMSANSNTNNQTNNGWVQWGSSVFGGLISGTKESIRGYLGASKKPHME-SYLEQQ

SNPs (tot: 90)

Position	A %	C %	G %	T %	Probability
408	88			11	0.923564
410	11	88			0.923564
411	88		11		0.923564
412	88			11	0.923564
413	88		11		0.923564
415		11		88	0.923564
417	22	11		66	0.999999
418		77	22		0.999999
419	11			88	0.923564
420	77		22		0.999999
421	22	66	11		0.999999
422		88	11		0.923564
423	22	77			0.999999
424	77		22		0.999999
426		88	11		0.923564
427	33			66	1.0
428	22	77			0.999999
429			33	66	1.0
430			25	75	1.0
432		25		75	1.0
433	25			75	1.0
436		18		81	0.999994
473		87	12		0.992554
580		90	10		0.90298
581		10		90	0.90298
584			80	20	0.999996
586		88		11	0.923564
587	88		11		0.923564
589		88	11		0.923564
590	88			11	0.923564
594		12		87	0.992554
595	12			87	0.992554
597		12	87		0.992554
602	87		12		0.992554
607		87	12		0.992554
609	87	12			0.992554
610			12	87	0.992554
644			75	25	1.0
645		75	25		1.0
646	25			75	1.0
651	25		75		1.0
654			25	75	1.0
655		25		75	1.0
660	75		25		1.0
662		25		75	1.0
663	25		12	62	1.0
664	12	87			0.992554
665	62		37		1.0
666	87			12	0.992554
669		16		83	0.994512
670	16			83	0.994512
671			16	83	0.994512
672		16		83	0.994512
677		16	16	66	0.988813
678			16	83	0.994512
680		20	80		0.995493
681	20	80			0.995493
683	80		20		0.995493
685		20		80	0.995493
686	80		20		0.995493
702		50	50		1.0
703		50		50	1.0
704			50	50	1.0
705	50			50	1.0
713	50			50	1.0
714			50	50	1.0
716	50			50	1.0
717	50	50			1.0
719		50		50	1.0
724	50		50		1.0
765			66	33	0.997452
987	83		16		0.994512
994	83			16	0.994512
995			83	16	0.994512
996	83			16	0.994512
997	83			16	0.994512
999	83			16	0.994512
1003	83	16			0.994512
1004		16		83	0.994512
1016	83	16			0.994512
1021		16		83	0.994512
1169		20		80	0.995493
1234	66		33		0.997452
1241	33			66	0.997452
1242	33			66	0.997452
1244	66		33		0.997452
1246		33	66		0.997452
1248		33		66	0.997452
1249			33	66	0.997452
1252	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain