SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3776

Length: 2890 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene3776
ATGGGGGGAGCGCTGCATTCTGATCTGCCCTCCCCTGCTGATATCTGCGTGGAAATGCCAGAGGAAGGAAGTCCTGCAAGGCGATCTCTGGATTTCATGGGATTCGGATTCGAACCCCAGATGGAGTCTGCATGGGATACGCCTAAGGAGAGTAGCAGTCCTCCAGCGATCAGGTGGAGGAAGGGCGAGCTCATTGGGTGTGGAGCTTATGGGCGTGTTTACATGGGTATGAATTTGGATTCTGGAGAGCTCTTGGCCATCAAAGAGGTCTTGATTGCCGCCAACAATTCATCAAGAGATAAGGCGCAGGCCCAAATTCAGGAGCTCGAGGAGGAGGTCAAGCTTCTTCACAATCTGTCGCATCCTAATATAGTGCGTTATCTAGGCACGGCCAGAGAGGATGACGCTTTAAACATTCTTTTGGAGTTTGTTCCTGGTGGGTCCATTGCTTCTCTTCTTGGCAAATTTGGATCCTTTACAGAGCCGGTCATTAGGATGTACACAAAACAACTCTTGCAGGGGCTGGAATATCTTCATAAGAATGGCATCATGCATCGTGACATTAAGGGTGCAAACATTCTTGTCGACAACAAAGGGTGCATCAAATTAGCAGACTTTGGTGCGTCCAAGAAAGTTGTTGAGCTGGCCACGATTACAGGGGCCAAGTCAATGAAAGGAACTCCATATTGGATGGCACCAGAAGTCATTCGCCAAACAGGGCATAGCTTGCCTGCTGATATATGGAGCGTTGGTTGTACTGTTATTGAAATGGCAACAGGCAAGCCCCCTTGGAGCCAACAGTTTCAAGAGGTGGCTGCTTTATTTCACATCGGGACAACAAAGTCACATCCCCCAATTCCAGATCATTTATCACCACCTGCAAAAGATTTTTTACTGAAATGCTTAGAAAAGGAACCAAATTTAAGACCTACTGCAACCCAGTTACTTAAGCATCCCTTTCTTACTGGTGGTTACACAGACTTACACCCTCTGGATCAATCCTCTAATTTGGGCCGCTCTATCAAGTCTCTTAGAAAATCAGGTGCAAATATCAGGGATTCCTGTATGATTAATACTATACCAAGTATGGAGAGTAGCATGCAAGACATGCCAAATCTTGATAGTGTCAGATATTCATCTCTTGAAGGAGAATTCTCAGAAAAGCCGGGAAATTTAAAATCTATTTGGGAGACTAATATGAGCAAGGGTATATGGAATAACACAAGTGTGGAGGACTTGAATTGTTCAGTAAGACTCGATTCTATCAGAGAAGATAGCTTTACCAAGAGCTTCAATCCTATGTATGAGCCATCAGGGATGGAAGATCACTGGGGATCAAAGGTGAATGAACATAGGGTTGGCATGGCCTCAAAAGAGCCTGATTATGACTTGCTAGAGCCACCTGGTCATCGTGATCTAGCTGAAAAAGAGACGGATAATTTCAGCTTCCAACCTGACTTAACACAATATGATGATGACGATGAGGTGACAGAATCTAAGATTAGAGCTTTCCTGGATGAAAAGGCATTAGAATTGAAGAGATTGCAAACCCCTCTGTATGAGGAATTTTACAACACCATTAATGCTGCTCCAAGTGGAGAACATGATATTGATAATAGTGTTTCTACTCCAAGGCTGACCAAATCTAAATCTCCGACTAAAGCTAGTGGCAGGTCATCACTTGCCATGACTAACTGTGATGGTGAAGCAAATATAAGCCCAGGTAGTCCAGCAAGAGATTCACCTAGTGTTGGTTACACTCCACTAGCCGAGGTTACATCGCCTAACCTAAATCAATCAGGAGTACTTCGGCAAGAAACTCTGCAAGGATCAACAAGTCCCAGGTTAAGCTCTTCTGAACGGGAAAGGAAATGGAAAGAAGAACTTGATCAAGAGCTTGAGAGAGGACGAGAAGAATTAAGGAAGCGTCTTGCAGCAAAAGGCAAAAACATCTTCACCCAATAAATTGCTCCAGCGCCCCAGTGGTCGATCAGCCTGTTCTACACCTACAAAGTAAATTTTGTTAAGTTCAGGGGGTCATTGTTGAAATACATCTCAACTAACTCAGTTAGATGCAGATTGAGATTATTGGTCATTGGAATTGCCAACCCTCCTGGCATGTTTGCATGAATGTCCGCCTTGACTTGTGACACAAGTTTGACATAAAGGATGTTAAGAAACACCATGGTAAAAAGGTTTTCAAAACCCTGCATGTTGGGTGTCACAAATGTAGCGTAAAATGAACAGGTCTGAAGAGAAGAGTTTTCATGTATGAAGAATAAATTGAGATGTCGGTTGGTGATATGTAAGCAATGGGTGCTCCCTGCGTATGGTCAACATCCATAATGCAAACGAGTAGAAGTACATGGCAATATGGGTTTTCTTGTTAAAGCAAAACTTCCAGATCAACTGATCCTATAAGAAAATAATATTCTACTAAAGTAAGCTGTTTAGCATGACCATCTTGGTTATTCGACATTTGTAGATTATAAATTTCTACTATTCTATGTACCTACAGTGGTTTGCAGTTTTTTGATGAGCCATAAACCATTCAGCATTTCAGGAGGTCTAATATAACTGCTCTTTAGGGAGAGCCAACTAGAGCCAACTATTATATAGGCATGGTCATCTTGTGGTTATTCTACATTGTAGAACATATTTTTCTATATTCGATGTACATATGGTGTCTTGAAGTTCCTTGAGGAGCCTTGGCCATTTGGCGTTTCAGAAGTTTGAACATACATGACTTTTACAGAGAGTCAACTATAAGTACCCTCATGATGAGAGTCGGGAGTCTATTCTAGTGATTGTACCTTTTTCTGACAGAACATTTAATTAATGATTACACTATCAAAAAAATTCGTCTCTGATGTCCATCCTTAATAGTTAC

Ace file of the UniGene sp_v2.0_unigene3776

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative n=1 Tax=Ricinus communis RepID=B9RTY0_RICCO	-	-	58%
FL-Next	sp=Mitogen-activated protein kinase kinase kinase 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	56%
Blast2go	mitogen activated protein kinase kinase kinase	-	-	68%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	68%

Source	GOs	Term	Type	Identity
Blast2go	cortical microtubule organization	GO:0043622	Biological Process	68%
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	68%
Blast2go	protein binding	GO:0005515	Molecular Function	68%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	68%
Blast2go	apoplast	GO:0048046	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	HECT	IPR000569	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Paired amphipathic helix	IPR003822	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	DNA repair metallo-beta-lactamase	IPR011084	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3		IPR015748	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Transcription regulator, HTH DeoR-type, conserved site	IPR018356	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O22042

Fln msg: atg_distance in limit (1-15): atg_distance = 10,

Fln protein: MGGALHSDLPSPADICVEMPEEGSPARRSLDFMGFGFEPQMESAWDTPKESSSPPAIRWRKGELIGCGAYGRVYMGMNLDSGELLAIKEVLIAANNSSRDKAQAQIQELEEEVKLLHNLSHPNIVRYLGTAREDDALNILLEFVPGGSIASLLGKFGSFTEPVIRMYTKQLLQGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATITGAKSMKGTPYWMAPEVIRQTGHSLPADIWSVGCTVIEMATGKPPWSQQFQEVAALFHIGTTKSHPPIPDHLSPPAKDFLLKCLEKEPNLRPTATQLLKHPFLTGGYTDLHPLDQSSNLGRSIKSLRKSGANIRDSCMINTIPSMESSMQDMPNLDSVRYSSLEGEFSEKPGNLKSIWETNMSKGIWNNTSVEDLNCSVRLDSIREDSFTKSFNPMYEPSGMEDHWGSKVNEHRVGMASKEPDYDLLEPPGHRDLAEKETDNFSFQPDLTQYDDDDEVTESKIRAFLDEKALELKRLQTPLYEEFYNTINAAPSGEHDIDNSVSTPRLTKSKSPTKASGRSSLAMTNCDGEANISPGSPARDSPSVGYTPLAEVTSPNLNQSGVLRQETLQGSTSPRLSSSERERKWKEELDQELERGREELRKRLAAKGKNIFTQ*

Protein Length: 656

Fln nts: _-_ATGGGGGGAGCGCTGCATTCTGATCTGCCCTCCCCTGCTGATATCTGCGTGGAAATGCCAGAGGAAGGAAGTCCTGCAAGGCGATCTCTGGATTTCATGGGATTCGGATTCGAACCCCAGATGGAGTCTGCATGGGATACGCCTAAGGAGAGTAGCAGTCCTCCAGCGATCAGGTGGAGGAAGGGCGAGCTCATTGGGTGTGGAGCTTATGGGCGTGTTTACATGGGTATGAATTTGGATTCTGGAGAGCTCTTGGCCATCAAAGAGGTCTTGATTGCCGCCAACAATTCATCAAGAGATAAGGCGCAGGCCCAAATTCAGGAGCTCGAGGAGGAGGTCAAGCTTCTTCACAATCTGTCGCATCCTAATATAGTGCGTTATCTAGGCACGGCCAGAGAGGATGACGCTTTAAACATTCTTTTGGAGTTTGTTCCTGGTGGGTCCATTGCTTCTCTTCTTGGCAAATTTGGATCCTTTACAGAGCCGGTCATTAGGATGTACACAAAACAACTCTTGCAGGGGCTGGAATATCTTCATAAGAATGGCATCATGCATCGTGACATTAAGGGTGCAAACATTCTTGTCGACAACAAAGGGTGCATCAAATTAGCAGACTTTGGTGCGTCCAAGAAAGTTGTTGAGCTGGCCACGATTACAGGGGCCAAGTCAATGAAAGGAACTCCATATTGGATGGCACCAGAAGTCATTCGCCAAACAGGGCATAGCTTGCCTGCTGATATATGGAGCGTTGGTTGTACTGTTATTGAAATGGCAACAGGCAAGCCCCCTTGGAGCCAACAGTTTCAAGAGGTGGCTGCTTTATTTCACATCGGGACAACAAAGTCACATCCCCCAATTCCAGATCATTTATCACCACCTGCAAAAGATTTTTTACTGAAATGCTTAGAAAAGGAACCAAATTTAAGACCTACTGCAACCCAGTTACTTAAGCATCCCTTTCTTACTGGTGGTTACACAGACTTACACCCTCTGGATCAATCCTCTAATTTGGGCCGCTCTATCAAGTCTCTTAGAAAATCAGGTGCAAATATCAGGGATTCCTGTATGATTAATACTATACCAAGTATGGAGAGTAGCATGCAAGACATGCCAAATCTTGATAGTGTCAGATATTCATCTCTTGAAGGAGAATTCTCAGAAAAGCCGGGAAATTTAAAATCTATTTGGGAGACTAATATGAGCAAGGGTATATGGAATAACACAAGTGTGGAGGACTTGAATTGTTCAGTAAGACTCGATTCTATCAGAGAAGATAGCTTTACCAAGAGCTTCAATCCTATGTATGAGCCATCAGGGATGGAAGATCACTGGGGATCAAAGGTGAATGAACATAGGGTTGGCATGGCCTCAAAAGAGCCTGATTATGACTTGCTAGAGCCACCTGGTCATCGTGATCTAGCTGAAAAAGAGACGGATAATTTCAGCTTCCAACCTGACTTAACACAATATGATGATGACGATGAGGTGACAGAATCTAAGATTAGAGCTTTCCTGGATGAAAAGGCATTAGAATTGAAGAGATTGCAAACCCCTCTGTATGAGGAATTTTACAACACCATTAATGCTGCTCCAAGTGGAGAACATGATATTGATAATAGTGTTTCTACTCCAAGGCTGACCAAATCTAAATCTCCGACTAAAGCTAGTGGCAGGTCATCACTTGCCATGACTAACTGTGATGGTGAAGCAAATATAAGCCCAGGTAGTCCAGCAAGAGATTCACCTAGTGTTGGTTACACTCCACTAGCCGAGGTTACATCGCCTAACCTAAATCAATCAGGAGTACTTCGGCAAGAAACTCTGCAAGGATCAACAAGTCCCAGGTTAAGCTCTTCTGAACGGGAAAGGAAATGGAAAGAAGAACTTGATCAAGAGCTTGAGAGAGGACGAGAAGAATTAAGGAAGCGTCTTGCAGCAAAAGGCAAAAACATCTTCACCCAATAA___ATTGCTCCAGCGCCCCAGTGGTCGATCAGCCTGTTCTACACCTACAAAGTAAATTTTGTTAAGTTCAGGGGGTCATTGTTGAAATACATCTCAACTAACTCAGTTAGATGCAGATTGAGATTATTGGTCATTGGAATTGCCAACCCTCCTGGCATGTTTGCATGAATGTCCGCCTTGACTTGTGACACAAGTTTGACATAAAGGATGTTAAGAAACACCATGGTAAAAAGGTTTTCAAAACCCTGCATGTTGGGTGTCACAAATGTAGCGTAAAATGAACAGGTCTGAAGAGAAGAGTTTTCATGTATGAAGAATAAATTGAGATGTCGGTTGGTGATATGTAAGCAATGGGTGCTCCCTGCGTATGGTCAACATCCATAATGCAAACGAGTAGAAGTACATGGCAATATGGGTTTTCTTGTTAAAGCAAAACTTCCAGATCAACTGATCCTATAAGAAAATAATATTCTACTAAAGTAAGCTGTTTAGCATGACCATCTTGGTTATTCGACATTTGTAGATTATAAATTTCTACTATTCTATGTACCTACAGTGGTTTGCAGTTTTTTGATGAGCCATAAACCATTCAGCATTTCAGGAGGTCTAATATAACTGCTCTTTAGGGAGAGCCAACTAGAGCCAACTATTATATAGGCATGGTCATCTTGTGGTTATTCTACATTGTAGAACATATTTTTCTATATTCGATGTACATATGGTGTCTTGAAGTTCCTTGAGGAGCCTTGGCCATTTGGCGTTTCAGAAGTTTGAACATACATGACTTTTACAGAGAGTCAACTATAAGTACCCTCATGATGAGAGTCGGGAGTCTATTCTAGTGATTGTACCTTTTTCTGACAGAACATTTAATTAATGATTACACTATCAAAAAAATTCGTCTCTGATGTCCATCCTTAATAGTTAC

Fln Alignment:

Contig3776___PAIRWRKGELIGCGAYGRVYMGMNLDSGELLAIKEVLIAANNSSRDKAQAQIQELEEEVKLLHNLSHPNIVRYLGTAREDDALNILLEFVPGGSIASLLGKFGSFTEPVIRMYTKQLLQGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATITGAKSMKGTPYWMAPEVIRQTGHSLPADIWSVGCTVIEMATGKPPWSQQFQEVAALFHIGTTKSHPPIPDHLSPPAKDFLLKCLEKEPNLRPTATQLLKHPFLTGGYTDLHPLDQSSNLGRSIKSLRKSGANIRDSCMINTIPSMESSMQDMPNLDSVRYSSLEGEFSEKPGNLKSIWETNMSKGIWNNTSVEDLNCSVRLDSIRED------SFTKSFNPMYEPSGMEDHWGSKVNEHRVGMASKEPDYDLLEPPGHRDLAEKETDNFSFQPDLTQYDDDDEVTESKIRAFLDEKALELKRLQTPLYEEFYNTIN-AAPSGEHDIDNSVSTPRLTK-SKSPTKASGRSSLAMTN
O22042______________PSIRWRKGELIGCGAFGRVYMGMNLDSGELLAIKQVLIAPSSASKEKTQGHIRELEEEVQLLKNLSHPNIVRYLGTVRESDSLNILMEFVPGGSISSLLEKFGSFPEPVIIMYTKQLLLGLEYLHNNGIMHRDIKGANILVDNKGCIRLADFGASKKVVELATVNGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSEQYQQFAAVLHIGRTKAHPPIPEDLSPEAKDFLMKCLHKEPSLRLSATELLQHPFVTGKRQEPYPAYRNS-LTECGNPITTQGMNVRSSINSLIRRSTCSGLKDVCELGSLRSSII---YPQKSNNSGFGWRDGDSDDLC-QTDMDDL-CNI--ESVRNNVLSQSTDLNKSFNPMCDST---DNWSCKFDESPKVMKSKSNLLSYQASQLQTGVPCDEETSLTFAGGSSVAEDDYKGTELKIKSFLDEKAQDLKRLQTPLLEEFHNAMNPGIPQGALGDTNIYNLPNLPSISKTPKRLPSRRLSAISD

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
63	25		75		0.996473
73		83		16	0.994512
77		83	16		0.994512
1004		25		75	0.996473
1184	80	20			0.995493
1185			20	80	0.995493
1187		20		80	0.995493
1189			80	20	0.995493
1192		20	80		0.995493
1193	60	20			0.99255
1194		80		20	0.995493
1196	80		20		0.995493
1197	80	20			0.995493
1199	80		20		0.995493
1201		20	80		0.995493
1203			80	20	0.995493
1481		83		16	0.994512
2168	16			83	0.994512
2169	83	16			0.994512
2171	83			16	0.994512
2172			83	16	0.994512
2280	90	10			0.90298
2283	70			10	0.999998
2371		14		85	0.993533
2404			12	87	0.992554
2405		87	12		0.992554
2406		87	12		0.992554
2409	50		50		1.0
2466	80	20			1.0
2470	13			86	0.999973
2860	50		50		1.0
2862	50		50		1.0
2863	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain