SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3755

Length: 1148 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene3755

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	maternal effect embryo arrest 14 protein [Arabidopsis thaliana] gb\|AAG40064.1\|AF324713_1 At2g15890 [Arabidopsis thaliana] gb\|AAK00412.1\|AF339730_1 unknown protein [Arabidopsis thaliana] gb\|AAD41977.1\| expressed protein [Arabidopsis thaliana] gb\|AAL38262.1	-	-	2.0e-19	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	maternal effect embryo arrest 14 protein	-	-	0.0	59%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	59%
Blast2go	defense response to fungus	GO:0050832	Biological Process	59%
Blast2go	chloroplast	GO:0009507	Cellular Component	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZQ2

Fln msg:

Fln protein: MLCVSSSACCGPLHVGCASAQPQKKIAGLGRNNMNQILAMSDQKSESPSHQTGQTPKLEPFSRDKITRGVREPGLLKKAEKAIVEQCSTLEGKESFSCWETYFEFEKMKEESEELCNVSSSEDGNSDCQPLERMENLVRQSGGVKSLIGNVSTIAKMPKLQNEGQSKEQIPMTSSSSPVSDANSPKEHPFIQPDELPKSQEELDEEERGRMPDSPYTKMLRRFSIFTSSRE*

Protein Length: 233

Fln nts: ACTTGTCATCTCTACCTTACAAAAAAATCCCTCTTATCTATATATTTCTGTATTACCCATTTATGAACTGTTTTATGCTTTGGGCAATTCATACTTCATAACCATATACCATCTGCAATTCACCCAATTTGAAGTACAGTTTCAGATTATATCTGTTTTGGGAAAA_-_ATGTTGTGTGTATCATCATCTGCTTGTTGCGGCCCTCTTCACGTGGGTTGTGCTTCAGCACAGCCTCAGAAGAAAATTGCTGGGCTTGGAAGGAACAATATGAATCAGATACTTGCAATGTCAGACCAGAAATCTGAGAGCCCATCTCATCAGACTGGTCAGACACCCAAGCTTGAGCCATTCAGCAGGGACAAGATTACTAGGGGAGTAAGGGAACCTGGCCTGTTGAAGAAAGCAGAAAAGGCCATTGTGGAGCAATGTTCAACTCTAGAAGGCAAGGAATCATTCAGCTGCTGGGAGACATATTTTGAATTTGAGAAGATGAAGGAGGAATCTGAGGAGCTGTGTAATGTTTCATCTTCAGAGGATGGAAACTCTGACTGTCAGCCCTTGGAACGAATGGAAAACTTAGTGAGACAATCAGGGGGTGTCAAATCTCTCATTGGCAATGTAAGCACGATTGCAAAAATGCCAAAGCTGCAAAATGAGGGTCAGAGCAAAGAACAAATCCCAATGACTTCATCCAGTTCTCCAGTTAGTGATGCCAATTCACCAAAAGAACATCCTTTCATTCAACCAGATGAATTGCCAAAATCCCAGGAAGAGCTGGATGAAGAGGAGAGGGGAAGGATGCCTGATTCACCCTATACAAAAATGCTGAGACGATTTTCGATATTTACTTCATCCAGAGAGTGA___AACTATTTGTATGTTTTGAATTGTGTTCGAGTTTGTGACACTGTGGTCACCTCCAGCAGGTCATTTGTAAGATACAATAAGTAGGGCTCTACTTTCATTTCATTATGATCTCGGTCCACTCTGTTTCCTATATATTCCCAGTGTCCTTTGGGAGGAAGAAATCAGTTGACTGCAGTTTTCTAAGAACCTTTACTGTTTATGGCTAATGTAAATATTATATATACGATACTATTTTTCTAAATGTGATGTGTGCTCCACCAGGGATGGAGTAGAGCATATTGTGAGT

Fln Alignment:

Contig3755___MLCVSSSACCGPLHVGCASAQPQKKIAGLGRNNMNQILAMSDQKSESPSHQTGQTPKLEPFSRDKITRGVREPGLLKKAEKAIVEQCSTLEGKESFSCWETYXXXXXXXXXXXXLCNVSSSEDGNSDCQPLERMENLVRQSGGVKSLIGNVSTIAKMPKLQNEGQSKEQIPMTXXXXXXXXXXXPKEHPFIQPDELPKSQEELDEEERGRMPDSPYTKMLRRFSIFTSS
A9NZQ2______________MFCVSAPAYCGPLHVGYASAQSQMKIVGLAKANVNQIFATSDQKFESPSHQNAQTPKLEPFSRDKVTRGIREPSLLRKAEKGIMDRCSTLEGEESFSCWETFFEFEKMKEESENLCNVSSSEDGISDCQPLEQMENLVRQSGGVKSLIGNVSMIAKMPKLQKEAQSKEQIPMPSSISPVSDANSPKERPFLEPDELPKSQEELEEEERERMPDSPYTKMLRRFSEFTSS

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
68	33	66			1.0
72			33	66	1.0
73			33	66	1.0
74			33	66	1.0
146	66		33		0.997452
172	25		75		0.996473
175			25	75	0.996473
177			25	75	0.996473
182		25		75	0.996473
280		16		83	0.994512
449		11		88	0.923564
461		11		88	0.923564
496			88	11	0.923564
498	88		11		0.923564
733		11		88	0.923564
795	12		87		0.992554
846		88		11	0.923564
956		10		90	0.90298
1000		57		42	1.0
1038		16		83	0.994512
1049	70		30		1.0
1065	11		88		0.923564
1069	88			11	0.923564
1090		14		85	0.993533
1092		85		14	0.993533
1093	14			28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain