SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3740

Length: 1265 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene3740

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	4.0e-11	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	receptor-like kinase	-	-	0.0	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	70%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	70%
Blast2go	ATP binding	GO:0005524	Molecular Function	70%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	70%
Blast2go	membrane	GO:0016020	Cellular Component	70%
Blast2go	mitochondrion	GO:0005739	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKY1

Fln msg: Overlapping hits, possible frame ERROR between 225 and 218, your sequence is shorter than subject: 253 - 431

Fln protein: RRDLGCHSFEQSDAYCFRCSSWDVVTLAVTQFKIIIHRDLKPSNILLDDELRAKVSDFGLAKLAPEDKASVGxxxxAGTFGYLAPEYAATGRVTTKSDVYSFGVVLMELIAGQKALDEKRSEDKIHLVPWFRHISRDQERLRAFIDPVLQSTGENLKSINTVAELSWHCTQREPNARPDMGYVVAVLGPLVKQWKPSDVSEDSEDPLGMTPEQALKKWKIFDDSSMTSFGGRTDVGSSDQAYIEGPGSVSAR*

Protein Length: 254

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGAACAGTCGGATGCTTATTGCTTTAGATGTAGCTCATGGGACGTCGTGACCTTGGCTGTCACTCAATTCAAAATTATCATTCACAGGGACTTGAAGCCTTCAAATATTCTTCTGGATGACGAGCTGCGAGCAAAAGTCTCTGATTTTGGTCTTGCAAAGCTTGCTCCCGAGGATAAAGCATCCGTCGGAxxxxxxxxxxxxGCTGGCACATTTGGATATCTTGCTCCAGAGTATGCAGCCACCGGACGTGTAACTACAAAATCAGATGTTTACAGTTTTGGAGTTGTGCTTATGGAGCTGATAGCAGGCCAGAAAGCCTTGGATGAGAAGCGGTCCGAAGATAAGATTCATCTGGTGCCATGGTTTAGACACATAAGTAGGGATCAGGAACGGCTCAGGGCATTTATAGATCCAGTACTCCAATCAACGGGTGAAAACTTGAAAAGCATTAATACCGTGGCTGAGCTTTCCTGGCATTGTACTCAACGAGAGCCTAATGCACGCCCTGACATGGGTTATGTAGTTGCTGTTCTGGGGCCATTGGTAAAGCAGTGGAAACCTTCCGACGTTTCCGAGGACAGTGAGGATCCTTTAGGAATGACACCGGAACAAGCTTTAAAGAAGTGGAAGATCTTCGATGATTCATCAATGACGTCCTTTGGAGGTAGGACTGATGTTGGAAGTTCTGATCAAGCATATATTGAAGGCCCTGGTTCTGTGAGTGCAAGATGATTCGTAGACCAGGGTATTAAGAAGCAAGTGTATGCGAGGACGAGGATGCACAAATATAGAAATTACTCGGAACTACCATTAATCTTGCATACCTCACATGACGAGTCTCCACAGGTTTGCAGAAGTTACAGGTTCTGCAACTTCTGCAATGGATTACTCAATGCATGAGAGTTCTGGTAAATTTAGAAATCAGGAGACAAGATTTTAAGGAAGCGAAGTTTTCTGCGAAGTGAGCAAATAAGGCAGAAAGAATGCGGAGACACTTTGTTTCTTCTCTGGTTGCAAAAGTTAAAAATAACTCTATACTGATTGGCTGTTCCAGTGACAAAATCCAAAATTCATTTTTCCTTTTGTTTTGCTCTGTTTAAATATTGTTTTCTATTTCATCTGGTCTGGTGAGTTAGATAGCCCTCGTGCAGTGTGTTGTGAGCACATATAAGGGAAGATATATTGATAAAGTTGATTTAAAATTAACATGTTTTTTGTTCTTCTTTGCGACCGAGAAAAT

Fln Alignment:

Contig3740___KIIIHRDLKPSNILLDDELRAKVSDFGLAKLAPE-DKASVGxxxAGTFGYLAPEYAATGRVTTKSDVYSFGVVLMELIAGQKALDEKRSEDKIHLVPWFRHISRDQERLRAFIDPVLQSTGENLKSINTVAELSWHCTQREPNARPDMGYVVAVLGPLV
B8LKY1______________KAVIYRDFKTSNILLDSEYNAKLSDFGLARDGPEGDKTHVSxxxMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKHRSNGEQNLVEWARPYLVDKRKLYRLVDPRL-SGHYSIKGAQKVAQLAHYCLSRDPKARPTMNDVVEVLTPLL

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
599		80		20	1.0
600			86	13	0.999973
606	86			13	0.999973
752	90		9		0.999872
753	90			9	0.999872
757		10	90		0.999898
758	90	10			0.999898
761		90	10		0.999898
763		10		90	0.999898
764	90			10	0.999898
766	90			10	0.999898
826	17	82			1.0
923	25			75	1.0
1046	25		75		0.996473
1063	75		25		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain