SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3738

Length: 862 nt

Origin of reads: Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3738 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	43%
Blast2go	protein	-	-	7.53955e-25	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Basic-leucine zipper domain	IPR004827	-	0.0	-
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
485	10	90			0.90298
489	90		10		0.90298
694	88		11		0.923564
703	11			88	0.923564
764			11	88	0.923564
765	11	88			0.923564
766		88	11		0.923564
767		88		11	0.923564
768	85		14		0.993533
770	83	16			0.994512
772			16	83	0.994512
773	83	16			0.994512
774	83	16			0.994512
777	83		16		0.994512
778		83	16		0.994512
780		20	40		1.0
782		16	33	50	1.0
784		50	50		1.0
791		40		60	1.0
792	40		60		1.0
796	60			40	1.0
797		40	60		1.0
799	60	40			1.0
800		60	40		1.0
801	40	60			1.0
803	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain