SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3726

Length: 1589 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3726 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid transporter, putative n=1 Tax=Ricinus communis RepID=B9RCQ1_RICCO	-	-	69%
FL-Next	tr=Amino acid transporter, putative; Ricinus communis (Castor bean).	-	-	78%
Blast2go	proline transporter	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	amino acid transport	GO:0006865	Biological Process	79%
Blast2go	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	79%
Blast2go	integral to membrane	GO:0016021	Cellular Component	79%
Blast2go	plasma membrane	GO:0005886	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9RCQ1

Fln msg: Overlapping hits, possible frame ERROR between 435 and 422,

Fln protein: MTTNGNQYFPSHSEFDYNNSVEDDTHRDEDAGAAFVLQSKGNWWHAGFHLTTAIVGPTILTLPYAFGGMGWTFGLFSLTVAAAVTFYSYFLMARVLDNCEKQGRRHIRFRELASDIxxxxxxMFYFVVSIQTTINMGVGVGCILLGSECIQIMYNNLDSSGQLKLYHFIIIVALVMIFLSQLPSFHSLRHINLASLVLCLAYSLTVTIACILAGRSSEAPSKDYSIKGSTLTRVFNAFSSMSILGTIFGNGILPEIQATLAPPATGKMFKGLCMCYGVISVTFYSVAVTGYWAFGNNAKSNVLKSIVPDEGPTLAPTWLLALSIGFILLQLFAIALVYSQVAYEIMEKQSADVKQSIFAMRNLLPRLALRSLYIIVCAFIAAMLPFFGDINALVGAIGFIPLDFILPMLLYNMSFKPPRNSATYWINNAIMVVFTGVGIMGTISSVRQITIDAKRFKLFSSDAFD*

Protein Length: 467

Fln nts: ATGCAAACGGTTCAACTCTAAGGCTCTGGCTGATGTAGACCTTCCGTCAGGGTTGTCAAAAAATCTAAAGGG_-_ATGACAACTAATGGCAATCAGTACTTTCCCTCACACTCGGAATTTGATTACAATAACTCAGTTGAAGATGATACACACAGAGATGAAGATGCAGGCGCAGCGTTCGTCCTGCAGTCAAAGGGGAATTGGTGGCATGCAGGATTTCACTTGACAACTGCAATTGTAGGCCCAACAATTCTTACGCTCCCATACGCCTTTGGCGGGATGGGGTGGACATTTGGGCTCTTTTCCCTCACTGTGGCAGCTGCAGTCACCTTCTACTCCTATTTCCTCATGGCCAGAGTGCTTGATAATTGCGAGAAACAAGGTCGTCGCCACATTCGATTCCGTGAACTGGCAAGCGATATCxxxxxxxxxxxxxxxxxxATGTTTTATTTTGTCGTTTCGATTCAGACAACGATCAATATGGGGGTGGGAGTTGGATGCATCCTACTGGGTAGTGAGTGTATACAGATCATGTACAACAATTTGGATAGCAGTGGCCAGCTTAAGCTGTATCACTTTATAATCATCGTAGCTCTGGTTATGATATTTCTTTCTCAGCTACCATCATTTCATTCCCTCCGTCACATCAATTTAGCATCTTTGGTTTTGTGTTTGGCGTACAGTTTGACCGTGACCATTGCATGTATATTAGCAGGCAGGTCGAGTGAAGCCCCAAGTAAGGATTATTCAATCAAAGGTTCAACCCTCACTAGGGTATTCAATGCCTTCAGTTCCATGTCAATTCTGGGAACTATATTTGGCAACGGTATTCTTCCAGAGATACAGGCCACCCTCGCTCCTCCTGCAACAGGCAAGATGTTCAAAGGATTATGCATGTGCTACGGAGTAATTTCTGTGACATTTTACAGTGTGGCAGTGACAGGGTATTGGGCGTTTGGTAACAATGCCAAGTCTAACGTATTGAAAAGTATCGTGCCAGATGAAGGCCCAACTCTCGCGCCCACTTGGCTCTTGGCCTTATCAATAGGCTTCATACTTTTACAGCTATTTGCAATAGCATTGGTGTATTCCCAAGTGGCCTATGAAATAATGGAGAAGCAATCAGCAGATGTCAAGCAGAGCATATTTGCAATGAGAAACTTGCTTCCTAGGCTGGCTCTGAGGTCTCTGTACATAATAGTTTGTGCCTTCATTGCAGCCATGCTGCCTTTCTTTGGAGACATTAATGCACTGGTAGGGGCCATTGGTTTCATACCTTTGGACTTCATCCTTCCCATGTTATTATACAACATGAGTTTCAAGCCACCTCGTAATTCAGCCACTTACTGGATCAACAACGCCATTATGGTGGTATTCACAGGTGTTGGAATTATGGGTACAATATCCTCAGTTCGGCAGATAACCATCGATGCAAAACGCTTCAAACTTTTCAGCAGTGATGCATTTGACTGA___CGATACAGAGTTAATAGAACTTTGGAATTCCTTACTGTAACACTGCAACATGAAAATTGAATTTGAATCACTCTGTGAAAATAAAACAAATACAAAGTTAATAGAAATTTGGATTCCCTAC

Fln Alignment:

Contig3726___RDEDAGAAFVLQSKGNWWHAGFHLTTAIVGPTILTLPYAFGGMGWTFGLFSLTVAAAVTFYSYFLMARVLDNCEKQGRRHIRFRELASDIxxxxxxFYFVVSIQTTINMGVGVGCILLGSECIQIMYNNLDSSGQLKLYHFIIIVALVMIFLSQLPSFHSLRHINLASLVLCLAYSLTVTIACILAGRSSEAPSKDYSIKGSTLTRVFNAFSSMSILGTIFGNGILPEIQATLAPPATGKMFKGLCMCYGVISVTFYSVAVTGYWAFGNNAKSNVLKSIVPDEGPTLAPTWLLALSIGFILLQLFAIALVYSQVAYEIMEKQSADVKQSIFAMRNLLPRLALRSLYIIVCAFIAAMLPFFGDINALVGAIGFIPLDFILPMLLYNMSFKPPRNSATYWINNAIMVVFTGVGIMGTISSVRQITIDAKRFKLFSSDAFD
B9RCQ1______________REVDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWGLGFFCLTVMGVVTFYSYFLMSKVLDHCEKAGRRHIRFRELAADVxxxxxxFYFVIFIQTAINTGVGIGAILLAGECLQIMYSNIYPSGPLKLFEFIAMVTAVMVVLSQLPTFHSLRHLNMASLLLSLGYTFLVVGACISAGLSKNAPPRDYSLESSESARVFSAFTSISIIAAIFGNGILPEIQATLAPPATGKMVKGLLMCYIVIVVTFYSAAVSGYWVFGNKSNSNILKSLLPDEGPALAPTWVLGLGVIFVLLQLFAIGLVYSQVAYEIMEKNSADVNQGMFSKRNLIPRLILRTLYVIFCGFMAAMLPFFGDINGVVGAIGFIPLDFVLPMLLYNMTYKPRRSSLTYWINISIIVVFTGAGIMGAFSSIRKLVLDAKKFKLFSSDVVD

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1429	12		87		0.992554
1443	12		87		0.992554
1452	85		14		0.993533
1460		85		14	0.993533
1468	14			85	0.993533
1491	14		71		0.984337
1495	85	14			0.993533
1497			85	14	0.993533
1531		33		66	0.997452
1533	33			66	0.997452
1534		33		66	0.997452
1540	33	66			0.997452
1543	33	66			0.997452
1545	33	66			0.997452
1549	33	66			0.997452
1551		33	66		0.997452
1552	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain