SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3681

Length: 1169 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3681 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	E3 ubiquitin-protein ligase UPL7 [Arabidopsis thaliana] ref\|NP_001030850.1\| E3 ubiquitin-protein ligase UPL7 [Arabidopsis thaliana] sp\|Q9SCQ2.1\|UPL7_ARATH RecName: Full=E3 ubiquitin-protein ligase UPL7; Short=Ubiquitin-protein ligase 7 emb\|CAB64212.1\| put	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	e3 ubiquitin-protein ligase upl7	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	83%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	83%
Blast2go	ubiquitin ligase complex	GO:0000151	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	0.0	-
Sma3	HECT	IPR000569	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8Q9

Fln msg: W1: There is no M at the beginning,

Fln protein: PRYGLFLQTSTDERLLFPHPSARILANGVQMIEFLGRIVGKALYEGILLDYCFSHVFVRKLLGRYSFLDELSGLDPELHRNLVYLKHYEGDVRDLALDFTVTEEVFGNLVVIELRPGGANMTVTNENRLQYVHAMADYKLNRQIQPLINAFNRGLSDLISPSWLSLFNAREFNQLLSGGEHDFDVDDLRNNTRYTGGYSESSRTVKLFWEVVRGLESGERCTLLKFVTSCSRAPLLGFKHLQPTFTIHKVACDTPLWAMIGGQDVERLPSTSTCYNTLKLPTYKRLSTLRSKLLYAIRANAGFELS*

Protein Length: 308

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGGTTGGATTACGGAGGTCTCTTTAAGGAATTTCTCACAGATTTGGCGAAGTCTGCTTTTGACCTCGGTATGGACTTTTCCTGCAAACTTCAACAGATGAGAGACTGCTCTTTCCTCACCCATCAGCAAGAATCCTTGCAAATGGGGTGCAGATGATTGAGTTCCTTGGCAGAATTGTTGGCAAAGCTTTGTATGAGGGAATTTTACTAGATTACTGTTTCTCTCATGTTTTTGTCCGGAAACTGCTAGGCAGATATAGCTTCCTCGATGAGCTTTCTGGCCTTGATCCAGAATTGCATCGAAATCTTGTGTACCTGAAGCATTATGAAGGGGATGTTAGAGACCTTGCTTTGGATTTCACAGTAACAGAGGAGGTTTTTGGAAATCTAGTGGTTATTGAGCTTAGACCGGGTGGTGCTAATATGACTGTTACAAATGAAAATAGGTTACAGTATGTACATGCAATGGCAGACTATAAACTTAATCGGCAGATCCAGCCGCTAATAAATGCATTCAATAGAGGATTATCAGATTTGATTTCACCATCGTGGCTGAGCTTATTTAATGCAAGGGAGTTCAACCAACTGCTTTCTGGGGGAGAGCATGACTTTGATGTTGATGACCTGAGAAACAACACTCGGTATACAGGTGGTTACTCTGAGAGCAGTCGAACTGTTAAATTATTTTGGGAGGTGGTCAGAGGACTAGAATCAGGAGAGCGCTGCACACTATTAAAGTTTGTGACAAGCTGTTCTCGAGCCCCATTATTGGGTTTCAAGCATCTACAACCAACCTTTACCATTCATAAGGTTGCATGTGATACACCACTTTGGGCAATGATTGGAGGACAGGATGTGGAACGGCTTCCGTCTACCTCAACTTGTTATAATACTCTAAAGCTTCCAACTTACAAACGACTAAGCACGTTGAGGAGCAAGCTCTTATATGCCATTAGGGCTAATGCAGGATTCGAGCTGTCTTGA___TAGATTGGTAATCAATAATCAATTTTATGTAGTCGTTTCTTAATCTATAAAGAACTTATTATTTCTTTTATTCCTCCTATAAAGGTATGATAAGGCTGCTTTATTCTAAGTTGAATGTAATATTAAATTTAACGGGGTTCATTCAATGTCTTCTATTTAAC

Fln Alignment:

Contig3681___LQTSTDERLLFPHPSARILANGVQMIEFLGRIVGKALYEGILLDYCFSHVFVRKLLGRYSFLDELSGLDPELHRNLVYLKHYEGDVRDLALDFTVTEEVFGNLVVIELRPGGANMTVTNENRLQYVHAMADYKLNRQIQPLINAFNRGLSDLISPSWLSLFNAREFNQLLSGGEHDFDVDDLRNNTRYTGGYSESSRTVKLFWEVVRGLESGERCTLLKFVTSCSRAPLLGFKHLQPTFTIHKVACDTPLWAMIGGQDVERLPSTSTCYNTLKLPTYKRLSTLRSKLLYAIRANAGFELS
D5A8Q9______________MQTSTDERLLFPHPSARILANGVQMIEFLGRIVGKALYEGILLDYCFSHVFVRKLLGRYSFLDELSGLDPELHRNLVYLKHYEGDVRDLALDFTVTEEVFGNRVVIELRPGGANMTVTNENRLQYVHAMADYKLNRQIQPLINAFRRGLSDLISPSWLSLFNAREFNQLLSGGEHDFDVDDLRNNTRYTGGYSESSRTVKLFWEVVRGLEPEERCTLLKFVTSCSRAPLLGFKHLQPTFTIHKVACDTPLWAMIGGQDVERLPSTSTCYNTLKLPTYKRLSTLRSKLLYAIRANAGFELS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
584	85		14		0.993533
634			83	16	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain