SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3608

Length: 1155 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene3608

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WS03725.C21_G09 SS-B-N-22 Picea sitchensis cDNA clone WS03725_G09 3', mRNA sequence.	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	thioredoxin-like protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	82%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	82%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	82%
Blast2go	isomerase activity	GO:0016853	Molecular Function	82%
Blast2go	antioxidant activity	GO:0016209	Molecular Function	82%
Blast2go	chloroplast	GO:0009507	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	IPR000866	-	-
Sma3		IPR017936	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPM4

Fln msg: your sequence is longer than subject: 252 - 193

Fln protein: MATAASKLMCSALLTPARICPITHHSRNLSVLLLGGYSNWDWNWKHRPSTLNRLVVRAARIESKAQLPLKSRAPEFELPEPLTGKVRRLDDFQGYPALLVMFICNHCPFVIHLKNDIVKLTNEYIPKGVAVVAISSNSTVTHPMDGPDFMAEEAKRFQFPFPYLYDESQETARAFGAVCTPEFFLFKRDGQDPFELAYHGQFDDSRPNNNKPITGRDLRLALDSVLNGKPISFPQKPSVGCSIKWHPGNTI*

Protein Length: 253

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCGCCCCTCTAAACAATTCGGATAAATTTGCAGACTCTCTGGTTGTCATTTTAAATGCCCATCGTCTCACCCATACGATTTTGAAGTCAAGTCCATCGATAGTTTACTCCACTATCAGGATTAGTTGATCATTACCGGTCCGA_-_ATGGCTACAGCGGCTTCGAAGCTCATGTGCAGTGCCCTCCTCACCCCTGCAAGGATTTGTCCAATTACTCATCATTCCCGCAATCTCTCAGTGTTACTGTTAGGTGGCTATAGCAATTGGGATTGGAATTGGAAACATCGGCCATCAACTTTAAACAGGTTAGTGGTTCGAGCAGCTCGAATAGAATCCAAGGCCCAACTGCCGCTCAAGTCCAGAGCCCCTGAGTTTGAGCTACCAGAGCCTCTGACTGGAAAAGTGCGGAGATTGGATGATTTCCAAGGATATCCTGCATTGCTGGTGATGTTTATTTGCAACCACTGTCCTTTTGTTATACATTTGAAGAACGATATTGTGAAGCTTACAAATGAATATATCCCGAAGGGAGTTGCTGTTGTAGCAATATCTTCTAATTCAACCGTCACTCACCCCATGGATGGTCCAGATTTCATGGCTGAAGAAGCTAAGCGATTCCAGTTTCCATTTCCGTATCTTTATGATGAGTCACAAGAAACTGCACGGGCTTTTGGAGCTGTGTGCACGCCAGAATTTTTCCTTTTCAAAAGGGATGGACAGGATCCATTTGAGCTTGCTTATCATGGGCAGTTTGATGATTCACGACCTAATAATAATAAACCCATTACAGGACGTGACTTGAGGTTGGCTTTAGACTCTGTGTTGAATGGAAAACCAATAAGTTTTCCACAAAAGCCAAGTGTTGGATGCAGCATCAAGTGGCACCCGGGTAATACTATCTAG___TGTTCTTCTTGGTCATTTAATGGATTAATTATTTTAAATTACCACCATGAACTTCAAAATGGTTGGAATTTGACATTTGACCATAGTGTCATTTCTTTACTTTAGCCAATGATCAACGTGAATGTGAGAATTAGTTTCAGATTGATCATCGTTTCGCTTGGCTTGGACAGCCCATATACCTCAGTTTTTTGTATTCTTTTTCCTTATTCGATAGTTTGTAACAGAAGCACC

Fln Alignment:

Contig3608___IESKAQLPLKSRAPEFELPEPLTGKVRRLDDFQGYPALLVMFICNHCPFVIHLKNDIVKLTNEYIPKGVAVVAISSNSTVTHPMDGPDFMAEEAKRFQFPFPYLYDESQETARAFGAVCTPEFFLFKRDGQDPFELAYHGQFDDSRPNNNKPITGRDLRLALDSVLNGKPISFPQKPSVGCSIKWHP
A9NPM4______________LESKT-MPLGSTAPDFELPEPLTGKVWKLADFEGHPALLVTFICNHCPFVVHLKKDIVKLANDYIPRGLAIAAISSNSTVTFPEDGPDFMAEDARKFEYPFPYLYDETQEVARAYGAVCTPEFYLFKKNGNQPFELAYHGQFDDSRPNNNKPVTGSDLRQALDCILSGQPISSVQKPSVGCSIKWHP

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
87			25	75	0.996473
112			16	83	0.994512
113			16	83	0.994512
114			16	83	0.994512
181			14	85	0.993533
182	85			14	0.993533
186		85		14	0.993533
188		14	85		0.993533
190			12	87	0.992554
192		87	12		0.992554
194	75	12			0.975346
195	75			25	1.0
197	12	75			0.975346
198		12		87	0.992554
200	87			12	0.992554
202		12	87		0.992554
206	87			12	0.992554
209	12		87		0.992554
212	12	87			0.992554
279	85		14		0.993533
499	16			83	0.994512
501			16	83	0.994512
502			16	83	0.994512
597		90	10		0.90298
599		88	11		0.923564
605	90			10	0.90298
609	90	10			0.90298
616	90	10			0.90298
617	10		90		0.90298
623	90		10		0.90298
722	16			83	0.994512
728		85	14		0.993533
730		16		83	0.994512
731			16	83	0.994512
732	16			83	0.994512
733		83	16		0.994512
735	83	16			0.994512
736	83	16			0.994512
737	83			16	0.994512
738	16		66	16	0.988813
741	83	16			0.994512
744		16	83		0.994512
747	83			16	0.994512
748		16	83		0.994512
749	16		83		0.994512
846		71	28		1.0
916		40	60		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
789	800	TAA TAA TAA TAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain