SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3602

Length: 986 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3602 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Preprotein translocase subunit secY, chloroplastic n=2 Tax=Arabidopsis RepID=SECY_ARATH	-	-	66%
FL-Next	sp=Preprotein translocase subunit secY, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	72%
Blast2go	preprotein translocase subunit chloroplastic-like	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	thylakoid membrane organization	GO:0010027	Biological Process	81%
Blast2go	transmembrane transport	GO:0055085	Biological Process	81%
Blast2go	protein secretion	GO:0009306	Biological Process	81%
Blast2go	P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0015450	Molecular Function	81%
Blast2go	protein binding	GO:0005515	Molecular Function	81%
Blast2go	integral to membrane	GO:0016021	Cellular Component	81%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	SecY protein	IPR002208	-	0.0	-
Sma3	Major facilitator superfamily	IPR011701	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q38885

Fln msg: Distance to subject end: 252 aas, your sequence is shorter than subject: 298 - 551

Fln protein: MILTMQTYGLQPAFPSPLSPKFPIYQLQRNLCKFSRKETVTCRAALTVENTGTKWGFSLPFNSKNQQLEDAVFDPLGLNKETRGDIRSVWEYFVATFMQAMENSLSLKQERSSSTRGLTASIEDSSIDVGDFFKGPLPGKFLKLLGYLALSRVGTYIPLGGVNREAFLGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLGQIIPKLQELQRKEGEAGRKKVLQWTRYASVGFAVVQAIGQVLYIRPYVNDFNTEWVLSSVTLLTLGAIVTTYIGEKISELKLGNGT

Protein Length: 299

Fln nts: ATGGGGATTCATGAAAGGATAACACATTCACTTTGGGGACAGAACTCTGCTCCCTTCTTCATAGGCCCAAATTTACACATCTCAATACACC_-_ATGATTTTAACGATGCAAACTTATGGTCTACAGCCTGCATTTCCATCACCCTTGTCACCCAAGTTCCCAATTTATCAATTGCAGAGAAATTTGTGTAAGTTTTCGCGTAAGGAGACTGTAACCTGTAGAGCAGCTCTAACAGTGGAAAATACGGGGACTAAATGGGGTTTCAGTCTACCTTTTAACAGCAAAAATCAGCAGCTAGAAGATGCAGTATTTGATCCACTAGGCCTCAATAAGGAGACACGTGGTGATATTCGTAGTGTATGGGAGTATTTTGTTGCAACGTTTATGCAGGCAATGGAAAATAGTTTAAGCCTCAAACAGGAGAGATCTTCATCAACCAGGGGATTAACAGCTTCAATTGAAGACAGTTCCATTGATGTGGGTGACTTTTTCAAAGGGCCACTTCCGGGAAAGTTCCTGAAGCTTCTAGGATATCTTGCCTTGTCCCGTGTTGGGACGTATATTCCTTTAGGTGGAGTCAACAGGGAAGCCTTTTTGGGCAACTTGGATCAGAACAGTCTGTTGAGCACTCTGGATTCATTTTCAGGAGGCGGTATTGGGCGGCTTGGGATATGCTCCCTTGGTATTGTTCCCTTCATTAATGCACAGATTGTCTTTCAGCTTCTTGGTCAGATCATCCCTAAATTGCAGGAACTTCAGAGGAAAGAGGGTGAAGCCGGAAGAAAGAAGGTTCTTCAGTGGACCCGCTATGCTTCTGTTGGTTTTGCTGTCGTACAAGCAATAGGGCAAGTACTCTACATTCGCCCTTATGTAAATGACTTCAATACAGAATGGGTGCTTTCATCAGTCACATTGCTGACTCTGGGTGCAATTGTTACAACGTATATAGGCGAAAAGATTTCTGAATTGAAGCTTGGAAATGGGACCT

Fln Alignment:

Contig3602___WGFSLPFNSKNQQLEDAVFDPLGLNKETRGDIRSVWEYFVATFMQAMENSLSLKQERSSSTRGLTASIEDSSIDVGDXXXXXXXXXXXXXXGYLALSRVGTYIPLGGVNREAFLGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLGQIIPKLQELQRKEGEAGRKKVLQWTRYASVGFAVVQAIGQVLYIRPYVNDFNTEWVLSSVTLLTLGAIVTTYIGEKISELKLGNGT
Q38885______________WNLGLVINSRSS--EASVFDPLGINPDETSGLSSIWESFVSLLSPSFESSSGNRRDKPSSGRGVAAAIEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGIYIPLGGVNREAFVGNLDQNSILSTLDTFSGGGIGRLGICSLGIVPFINAQIVFQLLAQVYPKLQDLQKKEGEAGRKKILQYTRYASVGFAIVQAIGQVFYLRPYVNDFSTEWVVSSVTLLTLGSVLTTYIGERISDLKLGNGT

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
838	14		85		0.993533
839		14		85	0.993533
840	14		85		0.993533
841	85			14	0.993533
842		85		14	0.993533
978		25	75		0.996473
979	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain