SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene3594

Length: 1595 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene3594 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana] gb\|AAF04895.1\|AC011437_10 unknown protein [Arabidopsis thaliana] gb\|AAK91359.1\| AT3g04650/F7O18_13 [Arabidopsis thaliana] gb\|AAO42761.1\| At3g04650/F7O18_13 [Arabidopsis tha	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	fad nad -binding oxidoreductase domain-containing protein	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Amine oxidase	IPR002937	-	-
Sma3	Conserved hypothetical protein CHP00275, flavoprotein HI0933-like	IPR004792	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	FAD dependent oxidoreductase	IPR006076	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNF6

Fln msg: Overlapping hits, possible frame ERROR between 1091 and 1058,

Fln protein: MANNTKKLFPLQSHGPHCWTxxxxxxxxxxxxxPQENIPNVKAEKVTREMLQGIEIALGLREDSLQKPFYTRVQLWGAALPTNTPDIPFIFDPYGRAGICGDWLLGSSLEAAALSGMALAHHIADYCASGGTNPDDFGMGLHKEFTPIDGHDIGQFPGSELLKEKDSASSEPAFDNFVAQGSSQKCATSWT*

Protein Length: 193

Fln nts: CATTTCAGGGGAGGGAGCAGTCACACAAAGAATGAATTCCGCTATCAGTCGCACCTGGACTATGCAATCTTTTCATGCCACTGTCAATGAAATTTCCGACTTCGCCGTATTCTCCCACCGAAATAAATCCTCCCCATGCATCACAAACTCTGCAACAAAACTGGAGGACGACTCGGCGCCCACAGAGGACAATGAAGCTAAACCCAATGGAGGCGCAGGGAATCGAAAGCAACACAGACCCGGTGTTAAATTCCGTGGTTCTTCAAGGAGGACCAGACTTCGCAAAGCATCTCTCCAAGAGCAGGTTGAGTTCACGACTGTCGTAAGGGACGACCCACACGTGGCGGTTATCGGAGGTGGAATGTCTGGTCTTATCTGTGCCCTCACGCTCGAACAGAGAGGCATCCGCTCTACAGTTTTTGACACGGGAATCCATGGTTTAGGAGGACGAATGGGAACAAGGAAAATTGATCCATATCCACTGGTTTTTGATCATGCTGCTCAGTTTTTCACGGTGAGTGATCCAAGATTCAAGAAACTTGTGGATGGATGGGTCTCAAAAGGTGTAGTCAAAGAATGGGAAGGACCATTGGGTAAGCTGTGTCCTGGAGGCCAGTTTACTCCACTACCACCATGTTCAAGATATATTGGTACAAATGGGATGCAGCCTCTTGCAGATTCACTGCTTTCTCAGAGTAATTTGGTCAATATTGTGAGACCCTGTTGGGTGAGTAGATTGGAATCATTCAACGGGATGTGGCACCTCACTGAAAGGATGAAACCTCGTGGGGTGTTTGATGCTATTGTTATAGCTCATAATGGAAAATGTGCAAACAGCTTGCTTGCATCAGCTGGGATACCACTCATTGCAAGACAGATGAAGAGGCTGGAGTTTGAGTTCTATCTGGGCCTTGCTTGCGGCATTTGATGATCCGCTTCCACTTCCTAAATATTTTGAAGGTGCATTCATTGAGGGAGTTGATTCTCTTTCATGG_-_ATGGCAAACAACACCAAGAAACTGTTTCCTTTGCAGAGCCACGGTCCTCATTGCTGGACCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCCTCAGGAGAATATCCCAAATGTCAAAGCAGAGAAAGTGACAAGGGAGATGCTTCAAGGGATTGAGATTGCTTTAGGATTACGAGAGGATTCATTACAGAAACCATTTTACACTCGAGTACAACTCTGGGGTGCAGCGCTTCCAACAAATACTCCAGATATTCCATTCATATTTGATCCATATGGAAGAGCAGGAATTTGTGGAGATTGGCTGCTAGGGTCAAGCTTAGAAGCTGCAGCTTTAAGTGGCATGGCTCTTGCTCATCATATTGCAGATTATTGTGCAAGTGGTGGTACAAATCCTGATGACTTTGGTATGGGCTTACACAAGGAGTTCACACCTATTGATGGGCATGACATTGGACAGTTTCCTGGCTCAGAATTACTAAAAGAAAAAGATTCTGCATCTTCAGAACCTGCTTTTGATAATTTTGTTGCACAAGGATCAAGTCAAAAGTGTGCAACTTCTTGGACCTAG___CCATTTTCCACTTGAGAGGTATCTA

Fln Alignment:

Contig3594___MANNTKKLFPLQSHGPHCWTFxxxxxxxxxxxVPQENIPNVKAEKVTREMLQGIEIALGLREDSLQKPFYTRVQLWGAALPTNTPDIPFIFDPYGRAGICGDWXXXXXXXXXXXXXXXXAHHIADYCASGGTNPDDFGMGLHKEFTPIDGHDIGQFPGSELLKEKDSASSEPAF
B8LNF6______________MANNTKKLFPSQNHGPHCWTFxxxxxxxxxxxVPQENIPNVKAEKVTKEMLQGIEIALGLPEGSLQKPFYTRVQLWGAALPTNTPDIPCIFDPYGRAGICGDWLLGSSLEAAALSGMALAHQIADYCASGGSNPDEFGMGLHKEFTPIGGHDIGQFPGSELLKKQDSVSSEPAF

SNPs (tot: 72)

Position	A %	C %	G %	T %	Probability
127	33		66		0.997452
130		66		33	0.997452
132	66			33	0.997452
209	28			71	1.0
237	87		12		0.992554
258	87	12			0.992554
260	12			87	0.992554
270	85		14		0.993533
297	85		14		0.993533
347	16	83			0.994512
349			83	16	0.994512
354	83		16		0.994512
355	16			83	0.994512
356		16		83	0.994512
357	16		16	66	0.988813
358			83	16	0.994512
359		16		83	0.994512
360		16		83	0.994512
366		83	16		0.994512
367			83	16	0.994512
369	16			83	0.994512
370		16	83		0.994512
371		83	16		0.994512
374		83	16		0.994512
416		87	12		0.992554
417		87		12	0.992554
476		83		16	0.994512
477			16	83	0.994512
478	16			83	0.994512
484			20	80	0.995493
485		20		80	0.995493
486		20		80	0.995493
487	20		80		0.995493
488	20		80		0.995493
490	80		20		0.995493
492	80	20			0.995493
493	20			80	0.995493
494		20		80	0.995493
495		80	20		0.995493
496	20			80	0.995493
498		80	20		0.995493
849	20		80		0.995493
850	20			80	0.995493
905	16			83	0.994512
906	16	83			0.994512
909	83			16	0.994512
1200		14		85	0.993533
1202		14		85	0.993533
1203	14	85			0.993533
1231		87		12	0.992554
1232		87	12		0.992554
1238			12	87	0.992554
1239		12		87	0.992554
1241	12	87			0.992554
1243		75	12		0.975346
1244		87	12		0.992554
1250		14		85	0.993533
1251	87		12		0.992554
1254		85		14	0.993533
1374			20	80	0.995493
1388		75		25	0.996473
1466			60	40	1.0
1495	14		85		0.993533
1500			85	14	0.993533
1501	16			83	0.994512
1503	20		80		0.995493
1504			80	20	0.995493
1505	80			20	0.995493
1557	75		25		0.996473
1567		25		75	0.996473
1570	25			75	0.996473
1584		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain